PDB entry 1yu2

View 1yu2 on RCSB PDB site
Description: Major Tropism Determinant M1 Variant
Class: Viral protein
Keywords: C-type Lectin, Beta Sandwich, Beta Prism, variability, diversity-generating retroelement
Deposited on 2005-02-11, released 2005-09-20
The last revision prior to the SCOP 1.75 freeze date was dated 2005-10-18, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: 0.164
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major Tropism Determinant (Mtd-M1)
    Species: Bordetella phage BMP-1
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1yu2a1, d1yu2a2
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yu2A (A:)
mstavqfrggttaqhatftgaareitvdtdkntvvvhdgataggfplarhdlvktafika
dksavaftrtgnatasikagtivevngklvqftadtaitmpaltagtdyaiyvcddgtvr
adsnfsaptgytsttarkvggfhyapgsnaaaqaggnttaqineyslwdikfrpaaldpr
gmtlvagafwadiyllgvnhltdgtskynvtiadgsaspkkstkfggdgsaaysdgawyn
faevmthhgkrlpnynefqalafgtteatssggtdvpttgvngtgatsawniftskwgvv
qasgclwtwgnefggvngaseytantggrgsvyaqpaaalfggswhytsnsgsraaywys
gpsnspanigargvcdhlile

    Sequence, based on observed residues (ATOM records): (download) 
    >1yu2A (A:)
vqfrggttaqhatftgaareitvdtdkntvvvhdgataggfplarhdlvktafikadksa
vaftrtgnatasikagtivevngklvqftadtaitmpaltagtdyaiyvcddgtvradsn
fsaptgytsttarkvggfhyapgsnaaaqaggnttaqineyslwdikfrpaaldprgmtl
vagafwadiyllgvnhltdgtskynvtiadgsaspkkstkfggdgsaaysdgawynfaev
mthhgkrlpnynefqalafgtteatssggtdvpttgvngtgatsawniftskwgvvqasg
clwtwgnefggvngaseytantggrgsvyaqpaaalfggswhytsnsgsraaywysgpsn
spanigargvcdhlile