PDB entry 1ysj
View 1ysj on RCSB PDB site
Description: Crystal Structure of Bacillus Subtilis YXEP Protein (APC1829), a Dinuclear Metal Binding Peptidase from M20 Family
Class: hydrolase
Keywords: M20 family Peptidase, Dinuclear Metal Binding, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, HYDROLASE
Deposited on
2005-02-08, released
2005-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.185
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: protein yxeP
Species: Bacillus subtilis [TaxId:1423]
Gene: yxeP
Database cross-references and differences (RAF-indexed):
- Uniprot P54955
- modified residue (36)
- engineered (77)
- modified residue (118)
- modified residue (135)
- modified residue (180)
- modified residue (199)
- modified residue (272)
- modified residue (291)
- modified residue (364)
Domains in SCOPe 2.08: d1ysja1, d1ysja2 - Chain 'B':
Compound: protein yxeP
Species: Bacillus subtilis [TaxId:1423]
Gene: yxeP
Database cross-references and differences (RAF-indexed):
- Uniprot P54955
- modified residue (36)
- engineered (77)
- modified residue (118)
- modified residue (135)
- modified residue (180)
- modified residue (199)
- modified residue (272)
- modified residue (291)
- modified residue (364)
Domains in SCOPe 2.08: d1ysjb1, d1ysjb2 - Heterogens: NI, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1ysjA (A:)
mhhhhhhssgvdlgtenlyfqsnamadkafhtrlinmrrdlhehpelsfqevettkkirr
wleeeqieildvpqlktgviaeikgredgpviairadidalpiqeqtnlpfaskvdgtmh
acghdfhtasiigtamllnqrraelkgtvrfifqpaeeiaagarkvleagvlngvsaifg
mhnkpdlpvgtigvkegplmasvdrfeivikgkgghasipnnsidpiaaagqiisglqsv
vsrnisslqnavvsitrvqagtswnvipdqaemegtvrtfqkearqavpehmrrvaegia
agygaqaefkwfpylpsvqndgtflnaaseaaarlgyqtvhaeqspggedfalyqekipg
ffvwmgtngteewhhpaftldeealtvasqyfaelavivletik
Sequence, based on observed residues (ATOM records): (download)
>1ysjA (A:)
adkafhtrlinmrrdlhehpelsfqevettkkirrwleeeqieildvpqlktgviaeikg
redgpviairadidalpiqeqtnlpfaskvdgtmhacghdfhtasiigtamllnqrrael
kgtvrfifqpaeeiaagarkvleagvlngvsaifgmhnkpdlpvgtigvkegplmasvdr
feivikgknsidpiaaagqiisglqnavvsitrvqagtswnvipdqaemegtvrtfqkea
rqavpehmrrvaegiaagygaqaefkwfpylpsvqndgtflnaaseaaarlgyqtvhaeq
spggedfalyqekipgffvwmgtngteewhhpaftldeealtvasqyfaelavivleti
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1ysjB (B:)
mhhhhhhssgvdlgtenlyfqsnamadkafhtrlinmrrdlhehpelsfqevettkkirr
wleeeqieildvpqlktgviaeikgredgpviairadidalpiqeqtnlpfaskvdgtmh
acghdfhtasiigtamllnqrraelkgtvrfifqpaeeiaagarkvleagvlngvsaifg
mhnkpdlpvgtigvkegplmasvdrfeivikgkgghasipnnsidpiaaagqiisglqsv
vsrnisslqnavvsitrvqagtswnvipdqaemegtvrtfqkearqavpehmrrvaegia
agygaqaefkwfpylpsvqndgtflnaaseaaarlgyqtvhaeqspggedfalyqekipg
ffvwmgtngteewhhpaftldeealtvasqyfaelavivletik
Sequence, based on observed residues (ATOM records): (download)
>1ysjB (B:)
dkafhtrlinmrrdlhehpelsfqevettkkirrwleeeqieildvpqlktgviaeikgr
edgpviairadidalpiqeqtnlpfaskvdgtmhacghdfhtasiigtamllnqrraelk
gtvrfifqpaeeiaagarkvleagvlngvsaifgmhnkpdlpvgtigvkegplmasvdrf
eivikgkidpiaaagqiisglqnavvsitrvqagtswnvipdqaemegtvrtfqkearqa
vpehmrrvaegiaagygaqaefkwfpylpsvqndgtflnaaseaaarlgyqtvhaeqspg
gedfalyqekipgffvwmgtngteewhhpaftldeealtvasqyfaelavivleti