PDB entry 1yq9
View 1yq9 on RCSB PDB site
Description: Structure of the unready oxidized form of [NiFe] hydrogenase
Class: oxidoreductase
Keywords: oxidoreductase
Deposited on
2005-02-01, released
2005-04-19
The last revision prior to the SCOP 1.73 freeze date was dated
2005-05-24, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.135
AEROSPACI score: 0.4
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Periplasmic [NiFe] hydrogenase Small subunit
Species: Desulfovibrio gigas
Database cross-references and differences (RAF-indexed):
- Uniprot P12943 (Start-263)
- see remark 999 (23)
- see remark 999 (88)
Domains in SCOP 1.73: d1yq9a1 - Chain 'B':
Compound: Periplasmic [NiFe] hydrogenase Small subunit
Species: Desulfovibrio gigas
Database cross-references and differences (RAF-indexed):
- Uniprot P12943 (Start-263)
- see remark 999 (23)
- see remark 999 (88)
Domains in SCOP 1.73: d1yq9b1 - Chain 'H':
Compound: Periplasmic [NiFe] hydrogenase Large subunit
Species: Desulfovibrio gigas
Database cross-references and differences (RAF-indexed):
- Uniprot P12944 (Start-535)
- see remark 999 (481)
- see remark 999 (496)
- Chain 'I':
Compound: Periplasmic [NiFe] hydrogenase Large subunit
Species: Desulfovibrio gigas
Database cross-references and differences (RAF-indexed):
- Uniprot P12944 (Start-535)
- see remark 999 (481)
- see remark 999 (496)
- Heterogens: NI, MG, SF4, F3S, H2S, FCO, PER, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1yq9A (A:)
ltakkrpsvvylhnaectgcsesvlrtvdpyvdelildvismdyhetlmagaghaveeal
heaikgdfvcvieggipmgdggywgkvggrnmydicaevapkakaviaigtcatyggvqa
akpnptgtvgvnealgklgvkainiagcppnpmnfvgtvvhlltkgmpeldkqgrpvmff
getvhdncprlkhfeagefatsfgspeakkgyclyelgckgpdtynncpkqlfnqvnwpv
qaghpciacsepnfwdlyspfysa
Sequence, based on observed residues (ATOM records): (download)
>1yq9A (A:)
kkrpsvvylhnaectgcsesvlrtvdpyvdelildvismdyhetlmagaghaveealhea
ikgdfvcvieggipmgdggywgkvggrnmydicaevapkakaviaigtcatyggvqaakp
nptgtvgvnealgklgvkainiagcppnpmnfvgtvvhlltkgmpeldkqgrpvmffget
vhdncprlkhfeagefatsfgspeakkgyclyelgckgpdtynncpkqlfnqvnwpvqag
hpciacsepnfwdlyspfysa
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1yq9B (B:)
ltakkrpsvvylhnaectgcsesvlrtvdpyvdelildvismdyhetlmagaghaveeal
heaikgdfvcvieggipmgdggywgkvggrnmydicaevapkakaviaigtcatyggvqa
akpnptgtvgvnealgklgvkainiagcppnpmnfvgtvvhlltkgmpeldkqgrpvmff
getvhdncprlkhfeagefatsfgspeakkgyclyelgckgpdtynncpkqlfnqvnwpv
qaghpciacsepnfwdlyspfysa
Sequence, based on observed residues (ATOM records): (download)
>1yq9B (B:)
krpsvvylhnaectgcsesvlrtvdpyvdelildvismdyhetlmagaghaveealheai
kgdfvcvieggipmgdggywgkvggrnmydicaevapkakaviaigtcatyggvqaakpn
ptgtvgvnealgklgvkainiagcppnpmnfvgtvvhlltkgmpeldkqgrpvmffgetv
hdncprlkhfeagefatsfgspeakkgyclyelgckgpdtynncpkqlfnqvnwpvqagh
pciacsepnfwdlyspfysa
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.