PDB entry 1yq0

View 1yq0 on RCSB PDB site
Description: Structure of p97/VCP in complex with ADP/ADP.AlFx
Deposited on 2005-01-31, released 2005-03-22
The last revision was dated 2008-04-22, with a file datestamp of 2008-04-18.
Experiment type: XRAY
Resolution: 4.5 Å
R-factor: 0.268
AEROSPACI score: -0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: MUS MUSCULUS
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: MUS MUSCULUS
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: MUS MUSCULUS
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, ADP, AF3

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.07, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >1yq0A (A:)
    masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
    gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
    dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
    vihcegepikredeeeslnevgyddvggcrkqlaqikemvelplrhpalfkaigvkpprg
    illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
    ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
    grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
    qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
    gledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgcgktllakaianecqanfi
    sikgpelltmwfgeseanvreifdkarqaapcvlffdeldsiakarggnigdgggaadrv
    inqiltemdgmstkknvfiigatnrpdiidpailrpgrldqliyiplpdeksrvailkan
    lrkspvakdvdleflakmtngfsgadlteicqracklairesieseirrererqtnpsam
    eveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtlqqsrgfgsfrfpsgnqgg
    agpsqgsgggtggsvytedndddlyg
    

    Sequence, based on observed residues (ATOM records):
    >1yq0A (A:)
    ivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdekirmnr
    vvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyfleayrpi
    rkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslnevgyddv
    ggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravanetgaff
    flingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgeverrivs
    qlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrleilqihtk
    nmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidaevmnsla
    vtmddfrwalsqsnpsalretvvevpqvtwediggledvkrelqelvqypvehpdkflkf
    gmtpskgvlfygppgcgktllakaianecqanfisikgpelltmwfgeseanvreifdka
    rqaapcvlffdeldsiakadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgr
    ldqliyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqrackla
    iresierrdhfeeamrfarrsvsdndirkyemfaqtlq
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >1yq0B (B:)
    masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
    gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
    dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
    vihcegepikredeeeslnevgyddvggcrkqlaqikemvelplrhpalfkaigvkpprg
    illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
    ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
    grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
    qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
    gledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgcgktllakaianecqanfi
    sikgpelltmwfgeseanvreifdkarqaapcvlffdeldsiakarggnigdgggaadrv
    inqiltemdgmstkknvfiigatnrpdiidpailrpgrldqliyiplpdeksrvailkan
    lrkspvakdvdleflakmtngfsgadlteicqracklairesieseirrererqtnpsam
    eveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtlqqsrgfgsfrfpsgnqgg
    agpsqgsgggtggsvytedndddlyg
    

    Sequence, based on observed residues (ATOM records):
    >1yq0B (B:)
    ivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdekirmnr
    vvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyfleayrpi
    rkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslnevgyddv
    ggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravanetgaff
    flingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgeverrivs
    qlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrleilqihtk
    nmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidaevmnsla
    vtmddfrwalsqsnpsalretvvevpqvtwediggledvkrelqelvqypvehpdkflkf
    gmtpskgvlfygppgcgktllakaianecqanfisikgpelltmwfgeseanvreifdka
    rqaapcvlffdeldsiakadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgr
    ldqliyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqrackla
    iresierrdhfeeamrfarrsvsdndirkyemfaqtlq
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >1yq0C (C:)
    masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
    gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
    dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
    vihcegepikredeeeslnevgyddvggcrkqlaqikemvelplrhpalfkaigvkpprg
    illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
    ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
    grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
    qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
    gledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgcgktllakaianecqanfi
    sikgpelltmwfgeseanvreifdkarqaapcvlffdeldsiakarggnigdgggaadrv
    inqiltemdgmstkknvfiigatnrpdiidpailrpgrldqliyiplpdeksrvailkan
    lrkspvakdvdleflakmtngfsgadlteicqracklairesieseirrererqtnpsam
    eveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtlqqsrgfgsfrfpsgnqgg
    agpsqgsgggtggsvytedndddlyg
    

    Sequence, based on observed residues (ATOM records):
    >1yq0C (C:)
    ivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdekirmnr
    vvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyfleayrpi
    rkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslnevgyddv
    ggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravanetgaff
    flingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgeverrivs
    qlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrleilqihtk
    nmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidaevmnsla
    vtmddfrwalsqsnpsalretvvevpqvtwediggledvkrelqelvqypvehpdkflkf
    gmtpskgvlfygppgcgktllakaianecqanfisikgpelltmwfgeseanvreifdka
    rqaapcvlffdeldsiakadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgr
    ldqliyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqrackla
    iresierrdhfeeamrfarrsvsdndirkyemfaqtlq