PDB entry 1ypz

View 1ypz on RCSB PDB site
Description: Immune receptor
Class: immune system
Keywords: H2-T22 protein, Beta-2-microglobulin, T cell receptor delta, T-cell receptor gamma chain, IMMUNE SYSTEM
Deposited on 2005-01-31, released 2005-04-12
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: 0.264
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H2-T22 protein
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • GB AAH03819 (0-243)
    Domains in SCOPe 2.04: d1ypza1, d1ypza2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (0-101)
      • cloning artifact (1-2)
    Domains in SCOPe 2.04: d1ypzb1
  • Chain 'C':
    Compound: H2-T22 protein
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • GB AAH03819 (0-243)
    Domains in SCOPe 2.04: d1ypzc1, d1ypzc2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (0-101)
      • cloning artifact (1-2)
    Domains in SCOPe 2.04: d1ypzd1
  • Chain 'E':
    Compound: T cell receptor delta
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YPZ (0-206)
    Domains in SCOPe 2.04: d1ypze1, d1ypze2
  • Chain 'F':
    Compound: T-cell receptor gamma chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YPZ (0-229)
    Domains in SCOPe 2.04: d1ypzf1, d1ypzf2
  • Chain 'G':
    Compound: T cell receptor delta
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YPZ (0-206)
    Domains in SCOPe 2.04: d1ypzg1, d1ypzg2
  • Chain 'H':
    Compound: T-cell receptor gamma chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YPZ (0-229)
    Domains in SCOPe 2.04: d1ypzh1, d1ypzh2

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ypzA (A:)
    gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
    trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
    ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
    gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
    ytchvyheglpeplilrwgg
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ypzB (B:)
    adpiqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfs
    kdwsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ypzC (C:)
    gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
    trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
    ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
    gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
    ytchvyheglpeplilrwgg
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ypzD (D:)
    adpiqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfs
    kdwsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ypzE (E:)
    gdqveqspsalslhegtdsalrcnftttmrsvqwfrqnsrgslislfylasgtkengrlk
    safdskerrystlhirdaqledsgtyfcaadtwhisegyelgtdklvfgqgtqvtvepks
    qppakpsvfimkngtnvaclvkdfypkevtislrsskkivefdpaivispsgkysavklg
    qygdsnsvtcsvqhnsetvhstdfeaa
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ypzF (F:)
    hgkleqpeisisrprdetaqisckvfiesfrsvtihwyrqkpnqglefllyvlatpthif
    ldkeykkmeasknpsastsiltiysleeedeaiyycsygegssgfhkvfaegtklivips
    dkrldadispkptiflpsvaetnlhktgtylclleaffpdvirvywkekdgntildsqeg
    dtlktndtymkfswltvperamgkehrcivkhennkggadqaiffpsikk
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ypzG (G:)
    gdqveqspsalslhegtdsalrcnftttmrsvqwfrqnsrgslislfylasgtkengrlk
    safdskerrystlhirdaqledsgtyfcaadtwhisegyelgtdklvfgqgtqvtvepks
    qppakpsvfimkngtnvaclvkdfypkevtislrsskkivefdpaivispsgkysavklg
    qygdsnsvtcsvqhnsetvhstdfeaa
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ypzH (H:)
    hgkleqpeisisrprdetaqisckvfiesfrsvtihwyrqkpnqglefllyvlatpthif
    ldkeykkmeasknpsastsiltiysleeedeaiyycsygegssgfhkvfaegtklivips
    dkrldadispkptiflpsvaetnlhktgtylclleaffpdvirvywkekdgntildsqeg
    dtlktndtymkfswltvperamgkehrcivkhennkggadqaiffpsikk