PDB entry 1ypz

View 1ypz on RCSB PDB site
Description: Immune receptor
Class: immune system
Keywords: H2-T22 protein, Beta-2-microglobulin, T cell receptor delta, T-cell receptor gamma chain
Deposited on 2005-01-31, released 2005-04-12
The last revision prior to the SCOP 1.75 freeze date was dated 2005-04-12, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: 0.264
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H2-T22 protein
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • GB AAH03819 (0-243)
    Domains in SCOP 1.75: d1ypza1, d1ypza2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: HOMO SAPIENS
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (0-101)
      • cloning artifact (1-2)
    Domains in SCOP 1.75: d1ypzb1
  • Chain 'C':
    Compound: H2-T22 protein
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • GB AAH03819 (0-243)
    Domains in SCOP 1.75: d1ypzc1, d1ypzc2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: HOMO SAPIENS
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (0-101)
      • cloning artifact (1-2)
    Domains in SCOP 1.75: d1ypzd1
  • Chain 'E':
    Compound: T cell receptor delta
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d1ypze1, d1ypze2
  • Chain 'F':
    Compound: T-cell receptor gamma chain
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d1ypzf1, d1ypzf2
  • Chain 'G':
    Compound: T cell receptor delta
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d1ypzg1, d1ypzg2
  • Chain 'H':
    Compound: T-cell receptor gamma chain
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d1ypzh1, d1ypzh2

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypzA (A:)
gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
ytchvyheglpeplilrwgg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypzB (B:)
adpiqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfs
kdwsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypzC (C:)
gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
ytchvyheglpeplilrwgg

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypzD (D:)
adpiqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfs
kdwsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypzE (E:)
gdqveqspsalslhegtdsalrcnftttmrsvqwfrqnsrgslislfylasgtkengrlk
safdskerrystlhirdaqledsgtyfcaadtwhisegyelgtdklvfgqgtqvtvepks
qppakpsvfimkngtnvaclvkdfypkevtislrsskkivefdpaivispsgkysavklg
qygdsnsvtcsvqhnsetvhstdfeaa

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypzF (F:)
hgkleqpeisisrprdetaqisckvfiesfrsvtihwyrqkpnqglefllyvlatpthif
ldkeykkmeasknpsastsiltiysleeedeaiyycsygegssgfhkvfaegtklivips
dkrldadispkptiflpsvaetnlhktgtylclleaffpdvirvywkekdgntildsqeg
dtlktndtymkfswltvperamgkehrcivkhennkggadqaiffpsikk

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypzG (G:)
gdqveqspsalslhegtdsalrcnftttmrsvqwfrqnsrgslislfylasgtkengrlk
safdskerrystlhirdaqledsgtyfcaadtwhisegyelgtdklvfgqgtqvtvepks
qppakpsvfimkngtnvaclvkdfypkevtislrsskkivefdpaivispsgkysavklg
qygdsnsvtcsvqhnsetvhstdfeaa

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypzH (H:)
hgkleqpeisisrprdetaqisckvfiesfrsvtihwyrqkpnqglefllyvlatpthif
ldkeykkmeasknpsastsiltiysleeedeaiyycsygegssgfhkvfaegtklivips
dkrldadispkptiflpsvaetnlhktgtylclleaffpdvirvywkekdgntildsqeg
dtlktndtymkfswltvperamgkehrcivkhennkggadqaiffpsikk