PDB entry 1ypd

View 1ypd on RCSB PDB site
Description: thdp dependent pyruvate decarboyxlase from yeast (form b)
Class: lyase
Keywords: thiamine pyruvate, pyruvamide, lyase
Deposited on 1998-03-09, released 1998-05-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2000-02-04, with a file datestamp of 2007-04-25.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.234
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: pyruvate decarboxylase (form b)
    Species: SACCHAROMYCES CEREVISIAE
    Database cross-references and differences (RAF-indexed):
    • PDB 1YPD (304-555)
    Domains in SCOPe 2.08: d1ypda1, d1ypda2, d1ypda3
  • Chain 'B':
    Compound: pyruvate decarboxylase (form b)
    Species: SACCHAROMYCES CEREVISIAE
    Database cross-references and differences (RAF-indexed):
    • PDB 1YPD (304-555)
    Domains in SCOPe 2.08: d1ypdb1, d1ypdb2, d1ypdb3
  • Heterogens: MG, TPP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ypdA (A:)
mseitlgkylferlkqvnvntvfglpgdfnlslldkiyevegmrwagnanelnaayaadg
yarikgmsciittfgvgelsalngiagsyaehvgvlhvvgvpsisaqakqlllhhtlgng
dftvfhrmsanisettamitdiatapaeidrcirttyvtqrpvylglpanlvdlnvpakl
lqtpidmslkpndaesekevidtilalvkdaknpviladaccsrhdvkaetkklidltqf
pavvtpmgkgsideqhpryggvyvgtlskpevkeavesadlilsvgallsdfntgsfsys
yktknivefhsdhmkirnatfpgvqmkfvlqkllttiadaakgykpvavpartpanaavp
astplkqewmwnqlgnflqegdvviaetgtsafginqttfpnntygisqvlwgsigfttg
atlgaafaaeeidpkkrvilfigdgslqltvqeistmirwglkpylfvlnndgytiekli
hgpkaqyneiqgwdhlsllptfgakdyethrvattgewdkltqdksfndnskirmieiml
pvfdapqnlveqakltaatnakq

    Sequence, based on observed residues (ATOM records): (download) 
    >1ypdA (A:)
seitlgkylferlkqvnvntvfglpgdfnlslldkiyevegmrwagnanelnaayaadgy
arikgmsciittfgvgelsalngiagsyaehvgvlhvvgvpshhtlgngdftvfhrmsan
isettamitdiatapaeidrcirttyvtqrpvylglpanlvdlnvpakllqtpidmslkp
ndaesekevidtilalvkdaknpviladaccsrhdvkaetkklidltqfpavvtpmgkgs
ideqhpryggvyvgtlskpevkeavesadlilsvgallsdfntgsfsysyktknivefhs
dhmkirnatfpgvqmkfvlqkllttiadaakgykpvavpartpanaavpastplkqewmw
nqlgnflqegdvviaetgtsafginqttfpnntygisqvlwgsigfttgatlgaafaaee
idpkkrvilfigdgslqltvqeistmirwglkpylfvlnndgytieklihgpkaqyneiq
gwdhlsllptfgakdyethrvattgewdkltqdksfndnskirmieimlpvfdapqnlve
qaklt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ypdB (B:)
mseitlgkylferlkqvnvntvfglpgdfnlslldkiyevegmrwagnanelnaayaadg
yarikgmsciittfgvgelsalngiagsyaehvgvlhvvgvpsisaqakqlllhhtlgng
dftvfhrmsanisettamitdiatapaeidrcirttyvtqrpvylglpanlvdlnvpakl
lqtpidmslkpndaesekevidtilalvkdaknpviladaccsrhdvkaetkklidltqf
pavvtpmgkgsideqhpryggvyvgtlskpevkeavesadlilsvgallsdfntgsfsys
yktknivefhsdhmkirnatfpgvqmkfvlqkllttiadaakgykpvavpartpanaavp
astplkqewmwnqlgnflqegdvviaetgtsafginqttfpnntygisqvlwgsigfttg
atlgaafaaeeidpkkrvilfigdgslqltvqeistmirwglkpylfvlnndgytiekli
hgpkaqyneiqgwdhlsllptfgakdyethrvattgewdkltqdksfndnskirmieiml
pvfdapqnlveqakltaatnakq

    Sequence, based on observed residues (ATOM records): (download) 
    >1ypdB (B:)
seitlgkylferlkqvnvntvfglpgdfnlslldkiyevegmrwagnanelnaayaadgy
arikgmsciittfgvgelsalngiagsyaehvgvlhvvgvpsisaqakqlllhhtlgngd
ftvfhrmsanisettamitdiatapaeidrcirttyvtqrpvylglpanlvdlnvpakll
qtpidmslkpndaesekevidtilalvkdaknpviladaccsrhdvkaetkklidltqfp
avvtpmgkgsideqhpryggvyvgtlskpevkeavesadlilsvgallnivefhsdhmki
rnatfpgvqmkfvlqkllttiadaakgykpvavpartpanaavpastplkqewmwnqlgn
flqegdvviaetgtsafginqttfpnntygisqvlwgsigfttgatlgaafaaeeidpkk
rvilfigdgslqltvqeistmirwglkpylfvlnndgytieklihgpkaqyneiqgwdhl
sllptfgakdyethrvattgewdkltqdksfndnskirmieimlpvfdapqnlveqaklt