PDB entry 1yp4

View 1yp4 on RCSB PDB site
Description: Crystal structure of potato tuber ADP-glucose pyrophosphorylase in complex with ADP-glucose
Class: transferase
Keywords: ADP-glucose pyrophosphorylase/ADP-glucose complex, TRANSFERASE
Deposited on 2005-01-29, released 2005-03-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.183
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum [TaxId:4113]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1yp4a1, d1yp4a2
  • Chain 'B':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum [TaxId:4113]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1yp4b1, d1yp4b2
  • Chain 'C':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum [TaxId:4113]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1yp4c1, d1yp4c2
  • Chain 'D':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum [TaxId:4113]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1yp4d1, d1yp4d2
  • Heterogens: SO4, ADQ, ADP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yp4A (A:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp4A (A:)
tcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsniski
yvltqfnsaslnrhlsrayagfvevlaaqqspenpdwfqgtadavrqylwlfeehtvley
lilagdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekp
qgeqlqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevi
pgatslgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqprylp
pskmldadvtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadrk
llaakgsvpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivtv
ikdalipsgiii

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yp4B (B:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp4B (B:)
cldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsniskiy
vltqfnsaslnrhlsrayasnmnegfvevlaaqqspenfqgtadavrqylwlfeehtvle
ylilagdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaek
pqgeqlqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsev
ipgatslgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqpryl
ppskmldadvtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadr
kllaakgsvpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivt
vikdalipsgiii

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yp4C (C:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp4C (C:)
tcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsniski
yvltqfnsaslnrhlsrayasegfvevlaaqqspenpdwfqgtadavrqylwlfeehtvl
eylilagdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefae
kpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgse
vipgatslgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqpry
lppskmldadvtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdad
rkllaakgsvpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgiv
tvikdalipsgiii

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1yp4D (D:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp4D (D:)
cldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsniskiy
vltqfnsaslnrhlsrayegfvevlaaqqspeqgtadavrqylwlfeehtvleylilagd
hlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekpqgeqlq
amkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevipgatsl
gmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqprylppskmld
advtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadrkllaakg
svpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivtvikdali
psgiii