PDB entry 1yp2

View 1yp2 on RCSB PDB site
Description: Crystal structure of potato tuber ADP-glucose pyrophosphorylase
Class: transferase
Keywords: ADP-glucose synthase, ADP-glucose pyrophosphorylase, AGPASE B, Alpha-D-glucose-1-phosphate adenyl transferase
Deposited on 2005-01-29, released 2005-03-15
The last revision prior to the SCOP 1.73 freeze date was dated 2005-03-15, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.11 Å
R-factor: 0.172
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yp2a1, d1yp2a2
  • Chain 'B':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yp2b1, d1yp2b2
  • Chain 'C':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yp2c1, d1yp2c2
  • Chain 'D':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yp2d1, d1yp2d2
  • Heterogens: SO4, PMB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yp2A (A:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp2A (A:)
qtcldpdasrsvlgiilrlypltkkrakpavplganyrlidipvsnclnsniskiyvltq
fnsaslnrhlsrayaegfvevlaaqqspenpdwfqgtadavrqylwlfeehtvleylila
gdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekpqgeq
lqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevipgat
slgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqprylppskm
ldadvtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadrkllaa
kgsvpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivtvikda
lipsgiii

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yp2B (B:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp2B (B:)
tcldpdasrsvlgiiltrlypltkkrakpavplganyrlidipvsnclnsniskiyvltq
fnsaslnrhlsrayasnegfvevlaaqqspefqgtadavrqylwlfeehtvleylilagd
hlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekpqgeqlq
amkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevipgatsl
gmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqprylppskmld
advtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadrkllaakg
svpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivtvikdali
psgiii

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yp2C (C:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp2C (C:)
qtcldpdasrsvlgiilggtrlypltkkrakpavplganyrlidipvsnclnsniskiyv
ltqfnsaslnrhlsrayasegfvevlaaqqspenpdwfqgtadavrqylwlfeehtvley
lilagdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekp
qgeqlqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevi
pgatslgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqprylp
pskmldadvtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadrk
llaakgsvpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivtv
ikdalipsgiii

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1yp2D (D:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp2D (D:)
tcldpdasrsvlgiiltrlypltkkrakpavplganyrlidipvsnclnsniskiyvltq
fnsaslnrhlsraynegfvevlaaqqspfqgtadavrqylwlfeehtvleylilagdhly
rmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekpqgeqlqamk
vdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevipgatslgmr
vqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqprylppskmldadv
tdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadrkllaakgsvp
igigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivtvikdalipsg
iii