PDB entry 1yom
View 1yom on RCSB PDB site
Description: Crystal structure of Src kinase domain in complex with Purvalanol A
Class: transferase
Keywords: protein tyrosine kinase, TRANSFERASE
Deposited on
2005-01-27, released
2006-01-27
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.222
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Proto-oncogene tyrosine-protein kinase Src
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P12931 (Start-282)
- engineered (91)
- engineered (116)
Domains in SCOPe 2.06: d1yoma_ - Chain 'B':
Compound: Proto-oncogene tyrosine-protein kinase Src
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P12931 (Start-282)
- engineered (91)
- engineered (116)
Domains in SCOPe 2.06: d1yomb_ - Heterogens: P01, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1yomA (A:)
qtqglakdaweipreslrlevklgqgcfgevwmgtwngttrvaiktlkpgtmspeaflqe
aqvmkklrheklvqlyavvseepiyivteymnkgslldflkgetgkylrlpqlvdmsaqi
asgmayvermnyvhrdlraanilvgenlvckvadfglarliednewtarqgakfpikwta
peaalygrftiksdvwsfgilltelttkgrvpypgmvnrevldqvergyrmpcppecpes
lhdlmcqcwrkepeerptfeylqafledyftstepqyqpgenl
Sequence, based on observed residues (ATOM records): (download)
>1yomA (A:)
lakdaweipreslrlevklgqgcfgevwmgtwngttrvaiktlkpgtmspeaflqeaqvm
kklrheklvqlyavvseepiyivteymnkgslldflkgetgkylrlpqlvdmsaqiasgm
ayvermnyvhrdlraanilvgenlvckvadfpikwtapeaalygrftiksdvwsfgillt
elttkgrvpypgmvnrevldqvergyrmpcppecpeslhdlmcqcwrkepeerptfeylq
afledyftstepqyqpgenl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1yomB (B:)
qtqglakdaweipreslrlevklgqgcfgevwmgtwngttrvaiktlkpgtmspeaflqe
aqvmkklrheklvqlyavvseepiyivteymnkgslldflkgetgkylrlpqlvdmsaqi
asgmayvermnyvhrdlraanilvgenlvckvadfglarliednewtarqgakfpikwta
peaalygrftiksdvwsfgilltelttkgrvpypgmvnrevldqvergyrmpcppecpes
lhdlmcqcwrkepeerptfeylqafledyftstepqyqpgenl
Sequence, based on observed residues (ATOM records): (download)
>1yomB (B:)
lakdaweipreslrlevklgqgcfgevwmgtwngttrvaiktlkpgtmspeaflqeaqvm
kklrheklvqlyavvseepiyivteymnkgslldflkgetgkylrlpqlvdmsaqiasgm
ayvermnyvhrdlraanilvgenlvckvadffpikwtapeaalygrftiksdvwsfgill
telttkgrvpypgmvnrevldqvergyrmpcppecpeslhdlmcqcwrkepeerptfeyl
qafledyftstepqyqpgenl