PDB entry 1ynt

View 1ynt on RCSB PDB site
Description: Structure of the immunodominant epitope displayed by the surface antigen 1 (SAG1) of Toxoplasma gondii complexed to a monoclonal antibody
Class: immune system
Keywords: Toxoplasma gondii, recombinant SAG1, conformational epitope, IMMUNE SYSTEM
Deposited on 2005-01-25, released 2005-12-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4F11E12 Fab variable light chain region
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YNT
    Domains in SCOPe 2.07: d1ynta1, d1ynta2
  • Chain 'B':
    Compound: 4F11E12 Fab variable heavy chain region
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YNT
    Domains in SCOPe 2.07: d1yntb1, d1yntb2
  • Chain 'C':
    Compound: 4F11E12 Fab variable light chain region
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YNT (0-212)
    Domains in SCOPe 2.07: d1yntc1, d1yntc2
  • Chain 'D':
    Compound: 4F11E12 Fab variable heavy chain region
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YNT (0-217)
    Domains in SCOPe 2.07: d1yntd1, d1yntd2
  • Chain 'E':
    Compound: protein l
    Species: Finegoldia magna [TaxId:334413]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YNT (0-60)
    Domains in SCOPe 2.07: d1ynte_
  • Chain 'F':
    Compound: Major Surface Antigen P30
    Species: Toxoplasma gondii [TaxId:5811]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yntf1, d1yntf2
  • Chain 'G':
    Compound: Major Surface Antigen P30
    Species: Toxoplasma gondii [TaxId:5811]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yntg1, d1yntg2
  • Heterogens: CD

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1yntA (A:)
    diqvtqttsslsaslgdrvtiscrasqdisnylnwyqqkpdgtvklliyytsrlhsgvps
    rfsgsgsgtdysltisnleqediatyfcqqgntlpytfgggtkleikradaaptvsifpp
    sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
    ltkdeyerhnsytceathktstspivksfnrne
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1yntB (B:)
    qvqlqqsgaelvrpgvsvkisckgsgytftdygmhwvkqshakslewigiistysgdasy
    nqkfkgkatmtvdkssstaymelarltsedsaiyycarsstwyyfdywgqgttltvssak
    ttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdly
    tlsssvtvtsstwpsqsitcnvahpasstkvdkkiepr
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1yntC (C:)
    diqvtqttsslsaslgdrvtiscrasqdisnylnwyqqkpdgtvklliyytsrlhsgvps
    rfsgsgsgtdysltisnleqediatyfcqqgntlpytfgggtkleikradaaptvsifpp
    sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
    ltkdeyerhnsytceathktstspivksfnrne
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1yntD (D:)
    qvqlqqsgaelvrpgvsvkisckgsgytftdygmhwvkqshakslewigiistysgdasy
    nqkfkgkatmtvdkssstaymelarltsedsaiyycarsstwyyfdywgqgttltvssak
    ttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdly
    tlsssvtvtsstwpsqsitcnvahpasstkvdkkiepr
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1yntE (E:)
    evtikvnlifadgkiqtaefkgtfeeataeayryadllakvngeytadledggnhmnikf
    a
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >1yntF (F:)
    pplvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttss
    ctskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqs
    cmvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqy
    csgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggs
    pekhhctvklefag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yntF (F:)
    plvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttssc
    tskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqsc
    mvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqyc
    sgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggsp
    ekhhctvklefa
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1yntG (G:)
    pplvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttss
    ctskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqs
    cmvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqy
    csgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggs
    pekhhctvklefag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yntG (G:)
    plvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttssc
    tskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqsc
    mvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqyc
    sgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggsp
    ekhhctvklefa