PDB entry 1ynn

View 1ynn on RCSB PDB site
Description: Taq RNA polymerase-rifampicin complex
Class: transferase
Keywords: TRANSFERASE, RNA polymerase, RIFAMPICIN
Deposited on 2005-01-24, released 2005-03-15
The last revision prior to the SCOP 1.73 freeze date was dated 2005-03-15, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.274
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase alpha chain
    Species: Thermus aquaticus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ynna1, d1ynna2
  • Chain 'B':
    Compound: DNA-directed RNA polymerase alpha chain
    Species: Thermus aquaticus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ynnb1, d1ynnb2
  • Chain 'C':
    Compound: DNA-directed RNA polymerase beta chain
    Species: Thermus aquaticus
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA-directed RNA polymerase beta' chain
    Species: Thermus aquaticus
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: DNA-directed RNA polymerase beta' chain
    Species: Thermus aquaticus
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: DNA-directed RNA polymerase omega chain
    Species: Thermus aquaticus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ynnk1
  • Heterogens: ZN, RFP

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ynnA (A:)
mlesklkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyied
vlhefstipgvkedvveiilnlkelvvrfldpkmasttlilraegpkevragdftpsadv
eimnpdlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafq
vedtrlgqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpeasllptpevsk
gekresaeedldlpleelglstrvlhslkeegiesvrallalnlkdlrnipgigerslee
irqalakkgftlke

    Sequence, based on observed residues (ATOM records): (download) 
    >1ynnA (A:)
lkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyiedvlhef
stipgvkedvveiilnlkelvvrfldpkmasttlilraegpkevragdftpsadveimnp
dlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqvedtr
lgqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpeasllpt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ynnB (B:)
mlesklkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyied
vlhefstipgvkedvveiilnlkelvvrfldpkmasttlilraegpkevragdftpsadv
eimnpdlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafq
vedtrlgqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpeasllptpevsk
gekresaeedldlpleelglstrvlhslkeegiesvrallalnlkdlrnipgigerslee
irqalakkgftlke

    Sequence, based on observed residues (ATOM records): (download) 
    >1ynnB (B:)
sklkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyiedvlh
efstipgvkedvveiilnlkelvvrfldpkmasttlilraegpkevragdftpsadveim
npdlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqved
trlgqrtdldkltlriwtdgsvtplealnqavailkehlnyfanp

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1ynnK (K:)
maepgidklfgmvdskyrltvvvakraqqllrhrfkntvlepeerpkmrtleglyddpna
vtwamkelltgrlffgenlvpedrlqkemerlypteeea

    Sequence, based on observed residues (ATOM records): (download) 
    >1ynnK (K:)
maepgidklfgmvdskyrltvvvakraqqllrhrfkntvlepeerpkmrtleglyddpna
vtwamkelltgrlffgenlvpedrlqkemerlypt