PDB entry 1ymm
View 1ymm on RCSB PDB site
Description: TCR/HLA-DR2b/MBP-peptide complex
Class: immune system
Keywords: protein-protein complex, T cell repertoire, auto-immunity, IMMUNE SYSTEM
Deposited on
2005-01-21, released
2005-05-03
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.274
AEROSPACI score: 0.08
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1ymma1, d1ymma2 - Chain 'B':
Compound: HLA class II histocompatibility antigen, DR beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1ymmb1, d1ymmb2 - Chain 'C':
Compound: MBP peptide
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: T cell receptor alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- GB AAO72258
- see remark 999 (91-94)
- see remark 999 (99-100)
- see remark 999 (103)
Domains in SCOPe 2.06: d1ymmd1 - Chain 'E':
Compound: T-cell receptor beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P01850 (0-End)
- engineered (12)
- see remark 999 (97-98)
- see remark 999 (101-103)
- engineered (192)
Domains in SCOPe 2.06: d1ymme1, d1ymme2 - Heterogens: NAG
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1ymmA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
dapsplpette
Sequence, based on observed residues (ATOM records): (download)
>1ymmA (A:)
keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
ap
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1ymmB (B:)
gdtrprflwqpkrechffngtervrfldryfynqeesvrfdsdvgefravtelgrpdaey
wnsqkdileqaraavdtycrhnygvvesftvqrrvqpkvtvypsktqplqhhnllvcsvs
gfypgsievrwflngqeekagmvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewrarsesaqsk
Sequence, based on observed residues (ATOM records): (download)
>1ymmB (B:)
trprflwqpkrechffngtervrfldryfynqeesvrfdsdvgefravtelgrpdaeywn
sqkdileqaraavdtycrhnygvvesftvqrrvqpkvtvypsllvcsvsgfypgsievrw
flngqeekagmvstgliqngdwtfqtlvmletvprsgevytcqvehpsvtspltvewr
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1ymmD (D:)
sqqgeedpqalsiqegenatmncsyktsinnlqwyrqnsgrglvhlilirsnerekhsgr
lrvtldtskksssllitasraadtasyfcatdttsgtykyifgtgtrlkvlaniqnpdpa
vyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavawsnk
sdfacanafnnsiipedtffpspessc
Sequence, based on observed residues (ATOM records): (download)
>1ymmD (D:)
qalsiqegenatmncsyktsinnlqwyrqnsgrglvhlilirsnerekhsgrlrvtldts
kksssllitasraadtasyfcatdttsgtykyifgt
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1ymmE (E:)
gavvsqhpswvisksgtsvkiecrsldfqattmfwyrqfpkqslmlmatsnegskatyeq
gvekdkflinhasltlstltvtsahpedssfyicsardltsganneqffgpgtrltvled
lknvfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqp
lkeqpalndsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivs
aeawgradc
Sequence, based on observed residues (ATOM records): (download)
>1ymmE (E:)
gavvsqhpswvisksgtsvkiecrsldfqattmfwyrqfpkqslmlmatsnegskatyeq
gvekdkflinhasltlstltvtsahpedssfyicsardltsganneqffgpgtrltvled
lknvfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqp
lkeqpalndsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivs
aeawgr