PDB entry 1ym8

View 1ym8 on RCSB PDB site
Description: crystal structure of GZZ shows up puckering of the proline ring in the Xaa position.
Deposited on 2005-01-20, released 2005-04-19
The last revision was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: 0.235
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: collagen gly-4(R)hyp-4(R)hyp
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1YM8 (0-26)
  • Chain 'B':
    Compound: collagen gly-4(R)hyp-4(R)hyp
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1YM8 (0-26)
  • Chain 'D':
    Compound: collagen gly-4(R)hyp-4(R)hyp
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1YM8 (0-26)
  • Chain 'E':
    Compound: collagen gly-4(R)hyp-4(R)hyp
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1YM8 (0-26)
  • Chain 'F':
    Compound: collagen gly-4(R)hyp-4(R)hyp
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1YM8 (0-26)
  • Chain 'G':
    Compound: collagen gly-4(R)hyp-4(R)hyp
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1YM8 (0-26)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.07, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >1ym8A (A:)
    gppgppgppgppgppgppgppgppgpp
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >1ym8B (B:)
    gppgppgppgppgppgppgppgppgpp
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >1ym8D (D:)
    gppgppgppgppgppgppgppgppgpp
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >1ym8E (E:)
    gppgppgppgppgppgppgppgppgpp
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >1ym8F (F:)
    gppgppgppgppgppgppgppgppgpp
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >1ym8G (G:)
    gppgppgppgppgppgppgppgppgpp