PDB entry 1ykp

View 1ykp on RCSB PDB site
Description: Protocatechuate 3,4-Dioxygenase Y408H mutant bound to DHB
Class: oxidoreductase
Keywords: protocatechuate, catechol
Deposited on 2005-01-18, released 2005-08-16
The last revision prior to the SCOP 1.73 freeze date was dated 2006-03-14, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: 0.145
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: protocatechuate 3,4-dioxygenase alpha chain
  Species: Pseudomonas putida
  Gene: pcaG
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00436 (0-199)
  Domains in SCOP 1.73: d1ykpa1
• Chain 'B':
  Compound: protocatechuate 3,4-dioxygenase beta chain
  Species: Pseudomonas putida
  Gene: PCAH
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00437 (0-237)
    • engineered (107)
    • modified residue (128)
• Chain 'C':
  Compound: protocatechuate 3,4-dioxygenase alpha chain
  Species: Pseudomonas putida
  Gene: pcaG
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00436 (0-199)
  Domains in SCOP 1.73: d1ykpc1
• Chain 'D':
  Compound: protocatechuate 3,4-dioxygenase beta chain
  Species: Pseudomonas putida
  Gene: PCAH
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00437 (0-237)
    • engineered (107)
    • modified residue (128)
• Chain 'E':
  Compound: protocatechuate 3,4-dioxygenase alpha chain
  Species: Pseudomonas putida
  Gene: pcaG
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00436 (0-199)
  Domains in SCOP 1.73: d1ykpe1
• Chain 'F':
  Compound: protocatechuate 3,4-dioxygenase beta chain
  Species: Pseudomonas putida
  Gene: PCAH
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00437 (0-237)
    • engineered (107)
    • modified residue (128)
• Chain 'G':
  Compound: protocatechuate 3,4-dioxygenase alpha chain
  Species: Pseudomonas putida
  Gene: pcaG
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00436 (0-199)
  Domains in SCOP 1.73: d1ykpg1
• Chain 'H':
  Compound: protocatechuate 3,4-dioxygenase beta chain
  Species: Pseudomonas putida
  Gene: PCAH
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00437 (0-237)
    • engineered (107)
    • modified residue (128)
• Chain 'I':
  Compound: protocatechuate 3,4-dioxygenase alpha chain
  Species: Pseudomonas putida
  Gene: pcaG
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00436 (0-199)
  Domains in SCOP 1.73: d1ykpi1
• Chain 'J':
  Compound: protocatechuate 3,4-dioxygenase beta chain
  Species: Pseudomonas putida
  Gene: PCAH
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00437 (0-237)
    • engineered (107)
    • modified residue (128)
• Chain 'K':
  Compound: protocatechuate 3,4-dioxygenase alpha chain
  Species: Pseudomonas putida
  Gene: pcaG
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00436 (0-199)
  Domains in SCOP 1.73: d1ykpk1
• Chain 'L':
  Compound: protocatechuate 3,4-dioxygenase beta chain
  Species: Pseudomonas putida
  Gene: PCAH
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00437 (0-237)
    • engineered (107)
    • modified residue (128)
• Heterogens: FE, DHB, HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ykpA (A:)
  piellpetpsqtagpyvhiglaleaagnptrdqeiwnrlakpdapgehilllgqvydgng
  hlvrdsflevwqadangeyqdaynlenafnsfgrtattfdagewtlhtvkpgvvnnaagv
  pmaphinislfarginihlhtrlyfddeaqanakcpvlnlieqpqrretliakrcevdgk
  tayrfdiriqgegetvffdf
  

  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ykpC (C:)
  piellpetpsqtagpyvhiglaleaagnptrdqeiwnrlakpdapgehilllgqvydgng
  hlvrdsflevwqadangeyqdaynlenafnsfgrtattfdagewtlhtvkpgvvnnaagv
  pmaphinislfarginihlhtrlyfddeaqanakcpvlnlieqpqrretliakrcevdgk
  tayrfdiriqgegetvffdf
  

  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ykpE (E:)
  piellpetpsqtagpyvhiglaleaagnptrdqeiwnrlakpdapgehilllgqvydgng
  hlvrdsflevwqadangeyqdaynlenafnsfgrtattfdagewtlhtvkpgvvnnaagv
  pmaphinislfarginihlhtrlyfddeaqanakcpvlnlieqpqrretliakrcevdgk
  tayrfdiriqgegetvffdf
  

  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ykpG (G:)
  piellpetpsqtagpyvhiglaleaagnptrdqeiwnrlakpdapgehilllgqvydgng
  hlvrdsflevwqadangeyqdaynlenafnsfgrtattfdagewtlhtvkpgvvnnaagv
  pmaphinislfarginihlhtrlyfddeaqanakcpvlnlieqpqrretliakrcevdgk
  tayrfdiriqgegetvffdf
  

  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ykpI (I:)
  piellpetpsqtagpyvhiglaleaagnptrdqeiwnrlakpdapgehilllgqvydgng
  hlvrdsflevwqadangeyqdaynlenafnsfgrtattfdagewtlhtvkpgvvnnaagv
  pmaphinislfarginihlhtrlyfddeaqanakcpvlnlieqpqrretliakrcevdgk
  tayrfdiriqgegetvffdf
  

  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ykpK (K:)
  piellpetpsqtagpyvhiglaleaagnptrdqeiwnrlakpdapgehilllgqvydgng
  hlvrdsflevwqadangeyqdaynlenafnsfgrtattfdagewtlhtvkpgvvnnaagv
  pmaphinislfarginihlhtrlyfddeaqanakcpvlnlieqpqrretliakrcevdgk
  tayrfdiriqgegetvffdf
  

  
  
• Chain 'L':
  No sequence available.