PDB entry 1yjg

View 1yjg on RCSB PDB site
Description: Variable Small Protein 1 of Borrelia turicatae (VspA or Vsp1)
Class: immune system
Keywords: helical bundle, IMMUNE SYSTEM
Deposited on 2005-01-14, released 2006-01-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.22 Å
R-factor: 0.209
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yjga_
  • Chain 'B':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yjgb_
  • Chain 'D':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yjgd_
  • Chain 'E':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yjge_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1yjgA (A:)
    tknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisgaysvisa
    vdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdadaktaidia
    dtgakdkgaeeliklntaidalltsaeaavtaainals
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yjgA (A:)
    tknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisgaysvisa
    vdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdadaktaidia
    dtgakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1yjgB (B:)
    tknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisgaysvisa
    vdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdadaktaidia
    dtgakdkgaeeliklntaidalltsaeaavtaainals
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yjgB (B:)
    tknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisgaysvisa
    vdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdadaktaidia
    dtgakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1yjgD (D:)
    tknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisgaysvisa
    vdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdadaktaidia
    dtgakdkgaeeliklntaidalltsaeaavtaainals
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yjgD (D:)
    nitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisgaysvisavd
    tklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdadaktaidiadt
    gakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1yjgE (E:)
    tknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisgaysvisa
    vdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdadaktaidia
    dtgakdkgaeeliklntaidalltsaeaavtaainals
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yjgE (E:)
    tknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisgaysvisa
    vdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdadaktaidia
    dtgakdkgaeeliklntaidalltsaeaavtaainal