PDB entry 1yjd
View 1yjd on RCSB PDB site
Description: Crystal structure of human CD28 in complex with the Fab fragment of a mitogenic antibody (5.11A1)
Class: immune system/signaling protein
Keywords: IgSF, CD28 homodimer, IMMUNE SYSTEM-SIGNALING PROTEIN COMPLEX
Deposited on
2005-01-14, released
2005-02-15
The last revision prior to the SCOPe 2.01 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.239
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'C':
Compound: T-cell-specific surface glycoprotein CD28
Species: Homo sapiens [TaxId:9606]
Gene: CD28
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1yjdc1 - Chain 'H':
Compound: Fab fragment of 5.11A1 antibody heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1yjdh1 - Chain 'L':
Compound: Fab fragment of 5.11A1 antibody light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1yjdC (C:)
tgnkilvkqspmlvaydnavnlsckysynlfsrefraslhkgldsavevcvvygnysqql
qvysktgfncdgklgnesvtfylqnlyvnqtdiyfckievmypppyldneksngtiihvk
gkhlcpsplfpgpskplvpr
Sequence, based on observed residues (ATOM records): (download)
>1yjdC (C:)
nkilvkqspmlvaydnavnlsckysynlfsrefraslhkgldsavevcvvygnysqqlqv
ysktgfncdgklgnesvtfylqnlyvnqtdiyfckievmypppyldneksngtiihvk
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1yjdH (H:)
qvqlqqsgpelvkpgtsvrisceasgytftsyyihwvkqrpgqglewigciypgnvntny
nekfkdkatlivdtssntaymqlsrmtsedsavyfctrshygldwnfdvwgagttvtvss
akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdc
Sequence, based on observed residues (ATOM records): (download)
>1yjdH (H:)
vqlqqsgpelvkpgtsvrisceasgytftsyyihwvkqrpgqglewigciypgnvntnyn
ekfkdkatlivdtssntaymqlsrmtsedsavyfctrshygldwnfdvwgagttvtvssa
kttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdl
ytlsssvtvpsstwpsetvtcnvahpasstkvdkkiv
- Chain 'L':
No sequence available.