PDB entry 1yi8

View 1yi8 on RCSB PDB site
Description: Crystal structure of tryptophanyl trRNA synthetase II from Deinococcus radiodurans in complex with L-Trp
Class: ligase
Keywords: Auxiliary tryptophanyl trna synthetase, LIGASE
Deposited on 2005-01-11, released 2005-02-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.26
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tryptophanyl-tRNA synthetase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Gene: DR1093
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yi8a_
  • Chain 'B':
    Compound: Tryptophanyl-tRNA synthetase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Gene: DR1093
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yi8b_
  • Chain 'C':
    Compound: Tryptophanyl-tRNA synthetase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Gene: DR1093
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yi8c_
  • Heterogens: TRP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yi8A (A:)
mpfvdlevptmttptpaatparprvltgdrptgalhlghlagslqnrvrlqdeaelfvll
advqaltdhfdrpeqvrenvlavaldylaagldpqkttcvvqsavpelaeltvyflnlvt
vshlrqnptvkaeiaqkgygervpagffvypvsqaadiaafgatlvpvgddqlpmleqtr
eivrrfnalyapvlaepqaqlsrvprlpgldgqakmskslgnaialgdsadevarkvmgm
ytdpghlrasdpgrvegnpvftfldafdpdparvqalkdqyragglgdvkvkkhlidvln
gvlapirtrraeyerdpdavlrfvtegtargrevaaqtlgqvrramrlfgh

    Sequence, based on observed residues (ATOM records): (download) 
    >1yi8A (A:)
arprvltgdrptgalhlghlagslqnrvrlqdeaelfvlladvqaltdhfdrpeqvrenv
lavaldylaagldpqkttcvvqsavpelaeltvyflnlvtvshlrqnptvkaeiaqkgyg
ervpagffvypvsqaadiaafgatlvpvgddqlpmleqtreivrrfnalyapvlaepqaq
lsrvprlpgldgqakmskslgnaialgdsadevarkvmgmytdpghlrasdpgrvegnpv
ftfldafdpdparvqalkdqyragglgdvkvkkhlidvlngvlapirtrraeyerdpdav
lrfvtegtargrevaaqtlgqvrramrlfgh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yi8B (B:)
mpfvdlevptmttptpaatparprvltgdrptgalhlghlagslqnrvrlqdeaelfvll
advqaltdhfdrpeqvrenvlavaldylaagldpqkttcvvqsavpelaeltvyflnlvt
vshlrqnptvkaeiaqkgygervpagffvypvsqaadiaafgatlvpvgddqlpmleqtr
eivrrfnalyapvlaepqaqlsrvprlpgldgqakmskslgnaialgdsadevarkvmgm
ytdpghlrasdpgrvegnpvftfldafdpdparvqalkdqyragglgdvkvkkhlidvln
gvlapirtrraeyerdpdavlrfvtegtargrevaaqtlgqvrramrlfgh

    Sequence, based on observed residues (ATOM records): (download) 
    >1yi8B (B:)
arprvltgdrptgalhlghlagslqnrvrlqdeaelfvlladvqaltdhfdrpeqvrenv
lavaldylaagldpqkttcvvqsavpelaeltvyflnlvtvshlrqnptvkaeiaqkgyg
ervpagffvypvsqaadiaafgatlvpvgddqlpmleqtreivrrfnalyapvlaepqaq
lsrvprlpgldgqakmskslgnaialgdsadevarkvmgmytdpghlrasdpgrvegnpv
ftfldafdpdparvqalkdqyragglgdvkvkkhlidvlngvlapirtrraeyerdpdav
lrfvtegtargrevaaqtlgqvrramrlfgh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yi8C (C:)
mpfvdlevptmttptpaatparprvltgdrptgalhlghlagslqnrvrlqdeaelfvll
advqaltdhfdrpeqvrenvlavaldylaagldpqkttcvvqsavpelaeltvyflnlvt
vshlrqnptvkaeiaqkgygervpagffvypvsqaadiaafgatlvpvgddqlpmleqtr
eivrrfnalyapvlaepqaqlsrvprlpgldgqakmskslgnaialgdsadevarkvmgm
ytdpghlrasdpgrvegnpvftfldafdpdparvqalkdqyragglgdvkvkkhlidvln
gvlapirtrraeyerdpdavlrfvtegtargrevaaqtlgqvrramrlfgh

    Sequence, based on observed residues (ATOM records): (download) 
    >1yi8C (C:)
arprvltgdrptgalhlghlagslqnrvrlqdeaelfvlladvqaltdhfdrpeqvrenv
lavaldylaagldpqkttcvvqsavpelaeltvyflnlvtvshlrqnptvkaeiaqkgyg
ervpagffvypvsqaadiaafgatlvpvgddqlpmleqtreivrrfnalyapvlaepqaq
lsrvprlpgldgqakmskslgnaialgdsadevarkvmgmytdpghlrasdpgrvegnpv
ftfldafdpdparvqalkdqyragglgdvkvkkhlidvlngvlapirtrraeyerdpdav
lrfvtegtargrevaaqtlgqvrramrlfgh