PDB entry 1yh8

View 1yh8 on RCSB PDB site
Description: Crystal structure of Aquifex aeolicus LpxC deacetylase complexed with palmitate
Class: hydrolase
Keywords: x-ray crystallography; A.aeolicus, HYDROLASE
Deposited on 2005-01-07, released 2005-02-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.201
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: lpxC, envA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67648 (0-End)
      • engineered (107)
    Domains in SCOPe 2.08: d1yh8a1, d1yh8a2
  • Chain 'B':
    Compound: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: lpxC, envA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67648 (0-End)
      • engineered (107)
    Domains in SCOPe 2.08: d1yh8b1, d1yh8b2
  • Heterogens: ZN, CL, PAM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yh8A (A:)
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei
dyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartfa
fdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgsp
vkgkfysfrgghslnvklvkelakkqkltr

    Sequence, based on observed residues (ATOM records): (download) 
    >1yh8A (A:)
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei
dyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartfa
fdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgsp
vkgkfysfrgghslnvklvkelakkq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yh8B (B:)
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei
dyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartfa
fdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgsp
vkgkfysfrgghslnvklvkelakkqkltr

    Sequence, based on observed residues (ATOM records): (download) 
    >1yh8B (B:)
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei
dyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartfa
fdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgsp
vkgkfysfrgghslnvklvkelakkq