PDB entry 1ygp

View 1ygp on RCSB PDB site
Description: phosphorylated form of yeast glycogen phosphorylase with phosphate bound in the active site.
Class: glycosyltransferase
Keywords: yeast, phosphorylated form, glycosyltransferase
Deposited on 1996-05-30, released 1996-12-23
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.179
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: yeast glycogen phosphorylase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: YEAST GLYCOGEN PHOSPHORYLASE
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06738 (27-878)
      • conflict (24)
      • conflict (66)
      • conflict (144)
      • conflict (289-290)
      • conflict (302)
      • conflict (439)
      • conflict (643)
    Domains in SCOPe 2.01: d1ygpa_
  • Chain 'B':
    Compound: yeast glycogen phosphorylase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: YEAST GLYCOGEN PHOSPHORYLASE
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06738 (27-878)
      • conflict (24)
      • conflict (66)
      • conflict (144)
      • conflict (289-290)
      • conflict (302)
      • conflict (439)
      • conflict (643)
    Domains in SCOPe 2.01: d1ygpb_
  • Heterogens: PO4, PLP

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ygpA (A:)
prltrrltgflpqeiksidtmipllsralwnkhqvkkfnkaedfqdrfidhvettlarsl
yncddmvayeaasmsirdnlvidwnktqqkfttrdpkrvyylsleflmgraldnalinmk
iedpedpaaskgkpremikgaldelgfkledvldqepdaglgngglgrlaacfvdsmate
gipawgyglryeygifaqkiidgyqvetpdywlnsgnpweiernevqipvtfygyvdrpe
ggkttlsasqwiggervlavaydfpvpgfktsnvnnlrlwqarpttefdlnkfnngdykn
svaqqqraesitavlypndnfaqgkelrlkqqyfwcaaslhdilrrfkkskrpwtefpdq
vaiqlndthptlaivelqrvlvdlekldwheawdivtktfaytnhtvmqealekwprrlf
ghllprhleiiydinwffledvakkfpkdvdllsrisiieensperqirmaflaivgshk
vngvvelhselikttifkdfikfygpskfvnvtngitprrwlkqanpslaklisetlndp
teeylldmakltqlekyvedkeflkkwnqvklnnkirlvdlikkendgvdiinreylddt
lfdmqvkriheykrqqlnvfgiiyrylamknmlkngasieevarkyprkvsifggksapg
yymakliiklincvadivnndesiehllkvvfvadynvskaeiiipasdlsehistagte
asgtsnmkfvmnggliigtvdganveitreigednvflfgnlsenveelrynhqyhpqdl
pssldsvlsyiesgqfspenpnefkplvdsikyhgdyylvsddfesylathelvdqefhn
qrsewlkksvlslanvgffssdrcieeysdtiwnvepvt

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygpA (A:)
trrltgflpqeiksidtmipllsralwnkhqvkkfnkaedfqdrfidhvettlarslync
ddmvayeaasmsirdnlvidwnktqqkfttrdpkrvyylsleflmgraldnalinmkipr
emikgaldelgfkledvldqepdaglgngglgrlaacfvdsmategipawgyglryeygi
faqkiidgyqvetpdywlnsgnpweiernevqipvtfygyvdrpttlsasqwiggervla
vaydfpvpgfktsnvnnlrlwqarpttefdlnkfnngdyknsvaqqqraesitavlypnd
nfaqgkelrlkqqyfwcaaslhdilrrfkkskrpwtefpdqvaiqlndthptlaivelqr
vlvdlekldwheawdivtktfaytnhtvmqealekwprrlfghllprhleiiydinwffl
edvakkfpkdvdllsrisiieensperqirmaflaivgshkvngvvelhselikttifkd
fikfygpskfvnvtngitprrwlkqanpslaklisetlndpteeylldmakltqlekyve
dkeflkkwnqvklnnkirlvdlikkendgvdiinreylddtlfdmqvkriheykrqqlnv
fgiiyrylamknmlkngasieevarkyprkvsifggksapgyymakliiklincvadivn
ndesiehllkvvfvadynvskaeiiipasdlsehistagteasgtsnmkfvmnggliigt
vdganveitreigednvflfgnlsenveelrynhqyhpqdlpssldsvlsyieqfspenp
nefkplvdsikyhgdyylvsddfesylathelvdqefhnqrsewlkksvlslanvgffss
drcieeysdtiwnvepvt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ygpB (B:)
prltrrltgflpqeiksidtmipllsralwnkhqvkkfnkaedfqdrfidhvettlarsl
yncddmvayeaasmsirdnlvidwnktqqkfttrdpkrvyylsleflmgraldnalinmk
iedpedpaaskgkpremikgaldelgfkledvldqepdaglgngglgrlaacfvdsmate
gipawgyglryeygifaqkiidgyqvetpdywlnsgnpweiernevqipvtfygyvdrpe
ggkttlsasqwiggervlavaydfpvpgfktsnvnnlrlwqarpttefdlnkfnngdykn
svaqqqraesitavlypndnfaqgkelrlkqqyfwcaaslhdilrrfkkskrpwtefpdq
vaiqlndthptlaivelqrvlvdlekldwheawdivtktfaytnhtvmqealekwprrlf
ghllprhleiiydinwffledvakkfpkdvdllsrisiieensperqirmaflaivgshk
vngvvelhselikttifkdfikfygpskfvnvtngitprrwlkqanpslaklisetlndp
teeylldmakltqlekyvedkeflkkwnqvklnnkirlvdlikkendgvdiinreylddt
lfdmqvkriheykrqqlnvfgiiyrylamknmlkngasieevarkyprkvsifggksapg
yymakliiklincvadivnndesiehllkvvfvadynvskaeiiipasdlsehistagte
asgtsnmkfvmnggliigtvdganveitreigednvflfgnlsenveelrynhqyhpqdl
pssldsvlsyiesgqfspenpnefkplvdsikyhgdyylvsddfesylathelvdqefhn
qrsewlkksvlslanvgffssdrcieeysdtiwnvepvt

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygpB (B:)
trrltgflpqeiksidtmipllsralwnkhqvkkfnkaedfqdrfidhvettlarslync
ddmvayeaasmsirdnlvidwnktqqkfttrdpkrvyylsleflmgraldnalinmkipr
emikgaldelgfkledvldqepdaglgngglgrlaacfvdsmategipawgyglryeygi
faqkiidgyqvetpdywlnsgnpweiernevqipvtfygyvdrpttlsasqwiggervla
vaydfpvpgfktsnvnnlrlwqarpttefdlnkfnngdyknsvaqqqraesitavlypnd
nfaqgkelrlkqqyfwcaaslhdilrrfkkskrpwtefpdqvaiqlndthptlaivelqr
vlvdlekldwheawdivtktfaytnhtvmqealekwprrlfghllprhleiiydinwffl
edvakkfpkdvdllsrisiieensperqirmaflaivgshkvngvvelhselikttifkd
fikfygpskfvnvtngitprrwlkqanpslaklisetlndpteeylldmakltqlekyve
dkeflkkwnqvklnnkirlvdlikkendgvdiinreylddtlfdmqvkriheykrqqlnv
fgiiyrylamknmlkngasieevarkyprkvsifggksapgyymakliiklincvadivn
ndesiehllkvvfvadynvskaeiiipasdlsehistagteasgtsnmkfvmnggliigt
vdganveitreigednvflfgnlsenveelrynhqyhpqdlpssldsvlsyieqfspenp
nefkplvdsikyhgdyylvsddfesylathelvdqefhnqrsewlkksvlslanvgffss
drcieeysdtiwnvepvt