PDB entry 1yg6

View 1yg6 on RCSB PDB site
Description: ClpP
Class: hydrolase
Keywords: Endopeptidase Clp, Caseinolytic protease, Protease Ti, Heat shock protein F21.5
Deposited on 2005-01-04, released 2006-04-04
The last revision prior to the SCOP 1.73 freeze date was dated 2006-04-04, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.221
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6a1
  • Chain 'B':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6b1
  • Chain 'C':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6c1
  • Chain 'D':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6d1
  • Chain 'E':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6e1
  • Chain 'F':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6f1
  • Chain 'G':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6g1
  • Chain 'H':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6h1
  • Chain 'I':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6i1
  • Chain 'J':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6j1
  • Chain 'K':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6k1
  • Chain 'L':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6l1
  • Chain 'M':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6m1
  • Chain 'N':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Escherichia coli
    Gene: clpP, lopP
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yg6n1
  • Heterogens: MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1yg6A (A:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yg6B (B:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6B (B:)
lvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiyl
yinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmi
hqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeave
yglvdsilthrn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yg6C (C:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6C (C:)
mvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiylyin
spggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmihqp
lggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeaveygl
vdsilthrn

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1yg6D (D:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1yg6E (E:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1yg6F (F:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1yg6G (G:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6G (G:)
lvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiyl
yinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmi
hqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeave
yglvdsilthrn

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1yg6H (H:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6H (H:)
eqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiylyinspg
gvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmihqplgg
yqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeaveyglvds
ilthrn

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1yg6I (I:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6I (I:)
tsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiylyinspggv
itagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmihqplggyq
gqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeaveyglvdsil
thrn

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1yg6J (J:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6J (J:)
tsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiylyinspggv
itagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmihqplggyq
gqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeaveyglvdsil
thrn

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1yg6K (K:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6K (K:)
sfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiylyinspggvitagms
iydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmihqplggyqgqatdi
eihareilkvkgrmnelmalhtgqsleqierdterdrflsapeaveyglvdsilthrn

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1yg6L (L:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6L (L:)
rgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiylyinspggvit
agmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmihqplggyqgq
atdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeaveyglvdsilth
rn

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1yg6M (M:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6M (M:)
rgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiylyinspggvit
agmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmihqplggyqgq
atdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeaveyglvdsilth
rn

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1yg6N (N:)
alvpmvieqtsrgersfdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiy
lyinspggvitagmsiydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvm
ihqplggyqgqatdieihareilkvkgrmnelmalhtgqsleqierdterdrflsapeav
eyglvdsilthrn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yg6N (N:)
fdiysrllkervifltgqvedhmanlivaqmlfleaenpekdiylyinspggvitagmsi
ydtmqfikpdvsticmgqaasmgaflltagakgkrfclpnsrvmihqplggyqgqatdie
ihareilkvkgrmnelmalhtgqsleqierdterdrflsapeaveyglvdsilthrn