PDB entry 1yft

View 1yft on RCSB PDB site
Description: The crystal structure of the catalytic fragment of alanyl-tRNA synthetase in complex wtih glycine
Class: ligase
Keywords: alpha-beta fold, amino acid binding, helix-loop helix motif, ligase
Deposited on 2005-01-03, released 2005-01-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.23 Å
R-factor: 0.207
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alanyl-tRNA synthetase
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: alaS
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67323 (Start-453)
      • cloning artifact (454-457)
    Domains in SCOPe 2.08: d1yfta1, d1yfta2, d1yfta3
  • Heterogens: GLY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yftA (A:)
mslsaheirelflsffekkghtrvksaplvpendptllfvnagmvpfknvflglekrpyk
ratscqkclrvsgkhndleqvgytsrhhtffemlgnfsfgdyfkkeaieyawefvtevlk
lpkeklyvsvykddeeayriwnehigipseriwrlgeednfwqmgdvgpcgpsseiyvdr
geeyegderyleiwnlvfmqynrdengvltplphpnidtgmgleriasvlqgknsnfeid
iifpliqfgeevsgkkygekfetdvalrviadhlraitfaisdgvipsnegrgyvirril
rramrfgyklgienpflykgvdlvvdimkepypelelsrefvkgivkgeekrfiktlkag
meyiqeviqkaleegrktlsgkevftaydtygfpvdlideiarekglgidlegfqcelee
qrerarkhfkveakkvkpvyshlkelgktsafvgaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1yftA (A:)
slsaheirelflsffekkghtrvksaplvpendptllfvnagmvpfknvflglekrpykr
atscqkclrvsgkhndleqvgytsrhhtffemlgnfsfgdyfkkeaieyawefvtevlkl
pkeklyvsvykddeeayriwnehigipseriwrlgeednfwqmgdvgpcgpsseiyvdrg
eeyegderyleiwnlvfmqynrdengvltplphpnidtgmgleriasvlqgknsnfeidi
ifpliqfgeevsgkkygekfetdvalrviadhlraitfaisdgvipsnegrgyvirrilr
ramrfgyklgienpflykgvdlvvdimkepypelelsrefvkgivkgeekrfiktlkagm
eyiqeviqkaleegrktlsgkevftaydtygfpvdlideiarekglgidlegfqceleeq
rerarkhpvyshlkelgktsafvgaaal