PDB entry 1yf8
View 1yf8 on RCSB PDB site
Description: Crystal structure of Himalayan mistletoe RIP reveals the presence of a natural inhibitor and a new functionally active sugar-binding site
Class: hydrolase
Keywords: Himalayan mistletoe, ribosome inactivating protein, Viscum album, natural inhibitor, sugar-binding site, HYDROLASE
Deposited on
2004-12-31, released
2005-03-08
The last revision prior to the SCOPe 2.01 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.237
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Beta-galactoside-specific lectin 4
Species: Viscum album [TaxId:3972]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1yf8a_ - Chain 'B':
Compound: Beta-galactoside-specific lectin 4
Species: Viscum album [TaxId:3972]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1yf8b1, d1yf8b2 - Heterogens: NAG, P6C, GAL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1yf8A (A:)
yerldldvtsqttgeeyfrfitllrdyvssgsfsneipllrqsgggveaarfvlveltne
ggdsitaaidvtnlyvvayqagsqsyflsgpgthlftgttrsslpfngsypdleqyaghr
kqiplgidqliqsvtalrfpgntrtqarsililiqmiseaarfnpilwrarqyinsgasf
lpdvymleletswgqqstqvqqstegvfnnpirlaipgnfvtltnvrdviaslaimlfvc
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1yf8B (B:)
csaseptvrivgrngmnvdvrdddfhdgnqiqlwpsksnndpnqlwtikrdgtirsngsc
lttygytagvyvmifdcntavreatiwqiwgngtiinprsnlalaassgikgttltvqtl
dytlgqgwlagndtaprevtiygfndlcmesnggsvwvetcvsqqndrwalygdgsirpe
qnqdqcltsgrdsvaginivscsggssgqrwvftnegailnlknglamdvanpglgqiii
ypatgkpnqmwlpvp