PDB entry 1ydx
View 1ydx on RCSB PDB site
Description: Crystal structure of Type-I restriction-modification system S subunit from M. genitalium
Class: DNA binding protein
Keywords: type-I hsds, DNA binding protein
Deposited on
2004-12-27, released
2005-08-23
The last revision prior to the SCOPe 2.01 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.199
AEROSPACI score: 0.36
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: type I restriction enzyme specificity protein MG438
Species: Mycoplasma genitalium [TaxId:2097]
Database cross-references and differences (RAF-indexed):
- Uniprot Q49434 (23-End)
- modified residue (23)
- modified residue (51)
- modified residue (223)
- modified residue (305)
- modified residue (329)
- modified residue (395)
Domains in SCOPe 2.01: d1ydxa1, d1ydxa2 - Heterogens: CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1ydxA (A:)
mghhhhhhhhhhssghiddddkhmtpklklnnninwtkrtidslfdlkkgemlekelitp
egkyeyfnggvknsgrtdkfntfkntisvivggscgyvrladknffcgqsnctlnlldpl
eldlkfayyalksqqeriealafgttiqnirisdlkeleipftsnkneqhaiantlsvfd
erlenlaslieinrklrdeyahklfsldeaflshwklealqsqmheitlgeifnfksgky
lkseerleegkfpyygagidntgfvaepntekdtisiisngyslgniryheipwfngtgs
ialepmnneiyvpffycalkylqkdikermksddspflslklageikvpyvksfqlqrka
gkivflldqkldqykkelssltvirdtllkklfpdmtertksikdy
Sequence, based on observed residues (ATOM records): (download)
>1ydxA (A:)
mtpklklnnninwtkrtidslfdlkkgemlekelitpegkyeyfnggvknsgrtdkfntf
kntisvivggscgyvrladknffcgqsnctlnlldpleldlkfayyalksqqeriealaf
gttiqnirisdlkeleipftsnkneqhaiantlsvfderlenlaslieinrklrdeyahk
lfsldeaflshwklealqsqmheitlgeifnfksgkylkseerleegkfpyygagidntg
fvaepntekdtisiisngyslgniryheipwfngtgsialepmnneiyvpffycalkylq
kdikermksddspflslklageikvpyvksfqlqrkagkivflldqkldqykkelssltv
irdtllkklfpdmt