PDB entry 1yde

View 1yde on RCSB PDB site
Description: Crystal Structure of Human Retinal Short-Chain Dehydrogenase/Reductase 3
Class: oxidoreductase
Keywords: OXIDOREDUCTASE, Structural Genomics, Structural Genomics Consortium, SGC
Deposited on 2004-12-23, released 2005-01-18
The last revision prior to the SCOP 1.73 freeze date was dated 2005-01-25, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.182
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydea1
  • Chain 'B':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydeb1
  • Chain 'C':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydec1
  • Chain 'D':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yded1
  • Chain 'E':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydee1
  • Chain 'F':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydef1
  • Chain 'G':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydeg1
  • Chain 'H':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydeh1
  • Chain 'I':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydei1
  • Chain 'J':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydej1
  • Chain 'K':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydek1
  • Chain 'L':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydel1
  • Chain 'M':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydem1
  • Chain 'N':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yden1
  • Chain 'O':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydeo1
  • Chain 'P':
    Compound: Retinal dehydrogenase/reductase 3
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ydep1
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ydeA (A:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeA (A:)
gtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdv
tqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltk
lalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncis
pgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiel
lvtggaelgy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ydeB (B:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeB (B:)
tgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcd
vtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytlt
klalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvnci
spgniwtplweprasiregmlaqplgrmgqpaevgaaavflaseanfctgiellvtggae
lgygcka

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ydeC (C:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeC (C:)
gtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdv
tqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltk
lalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncis
pgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiel
lvtggaelgy

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1ydeD (D:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeD (D:)
gtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdv
tqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltk
lalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncis
pgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiel
lvtggaelgygckas

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1ydeE (E:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeE (E:)
gtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdv
tqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltk
lalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncis
pgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiel
lvtggaelgy

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1ydeF (F:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeF (F:)
gtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdv
tqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltk
lalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncis
pgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiel
lvtggaelgygckasr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1ydeG (G:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeG (G:)
ryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdvtq
eddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltkla
lpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncispg
niwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiellv
tggaelg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1ydeH (H:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeH (H:)
tryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdvt
qeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltkl
alpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncisp
gniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiell
vtggaelgygckas

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1ydeI (I:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeI (I:)
yagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdvtqe
ddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltklal
pylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncispgn
iwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiellvt
ggaelgy

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1ydeJ (J:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeJ (J:)
gtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdv
tqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltk
lalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncis
pgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiel
lvtggaelgygckas

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1ydeK (K:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeK (K:)
gtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdv
tqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltk
lalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncis
pgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiel
lvtggaelgy

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1ydeL (L:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeL (L:)
gtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdv
tqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltk
lalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncis
pgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiel
lvtggaelgygckas

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1ydeM (M:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeM (M:)
kvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdvtqeddv
ktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltklalpyl
rksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncispgniwt
plweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiellvtgga
elgy

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1ydeN (N:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeN (N:)
kvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdvtqeddv
ktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltklalpyl
rksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncispgniwt
plweprasiregmlaqplgrmgqpaevgaaavflaseanfctgiellvtggaelgygcka

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1ydeO (O:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeO (O:)
yagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdvtqe
ddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltklal
pylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncispgn
iwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiellvt
ggaelgy

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >1ydeP (P:)
matgtryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfil
cdvtqeddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtyt
ltklalpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvn
cispgniwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctg
iellvtggaelgygckasrstpvdapdips

    Sequence, based on observed residues (ATOM records): (download) 
    >1ydeP (P:)
ryagkvvvvtgggrgigagivrafvnsgarvvicdkdesggraleqelpgavfilcdvtq
eddvktlvsetirrfgrldcvvnnaghhpppqrpeetsaqgfrqllelnllgtytltkla
lpylrksqgnvinisslvgaigqaqavpyvatkgavtamtkalaldespygvrvncispg
niwtplweelaalmpdprasiregmlaqplgrmgqpaevgaaavflaseanfctgiellv
tggaelgygckasr