PDB entry 1yd8

View 1yd8 on RCSB PDB site
Description: complex of human gga3 gat domain and ubiquitin
Class: protein transport, chromosomal protein
Keywords: trafficking, post translational modification, mono-ubiquitination, protein transport;, protein transport, chromosomal protein
Deposited on 2004-12-23, released 2005-02-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'G':
    Compound: ADP-ribosylation factor binding protein gga3
    Species: Homo sapiens [TaxId:9606]
    Gene: GGA3, KIAA0154
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NZ52 (4-End)
      • cloning artifact (3)
    Domains in SCOPe 2.07: d1yd8g1, d1yd8g2
  • Chain 'H':
    Compound: ADP-ribosylation factor binding protein gga3
    Species: Homo sapiens [TaxId:9606]
    Gene: GGA3, KIAA0154
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NZ52 (4-End)
      • cloning artifact (3)
    Domains in SCOPe 2.07: d1yd8h2, d1yd8h3
  • Chain 'U':
    Compound: ubiquin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yd8u_
  • Chain 'V':
    Compound: ubiquin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yd8v_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1yd8G (G:)
    gamgiqkvtkrlhtleevnnnvrllsemllhysqedssdgdrelmkelfdqcenkrrtlf
    klasetedndnslgdilqasdnlsrvinsyktiiegqv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yd8G (G:)
    giqkvtkrlhtleevnnnvrllsemllhysqedssdgdrelmkelfdqcenkrrtlfkla
    setedndnslgdilqasdnlsrvinsyktiieg
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >1yd8H (H:)
    gamgiqkvtkrlhtleevnnnvrllsemllhysqedssdgdrelmkelfdqcenkrrtlf
    klasetedndnslgdilqasdnlsrvinsyktiiegqv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yd8H (H:)
    giqkvtkrlhtleevnnnvrllsemllhysqedssdgdrelmkelfdqcenkrrtlfkla
    setedndnslgdilqasdnlsrvinsyktiieg
    

  • Chain 'U':
    Sequence, based on SEQRES records: (download)
    >1yd8U (U:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yd8U (U:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'V':
    Sequence, based on SEQRES records: (download)
    >1yd8V (V:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yd8V (V:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl