PDB entry 1ycj

View 1ycj on RCSB PDB site
Description: Crystal structure of the kainate receptor GluR5 ligand-binding core in complex with (S)-glutamate
Class: membrane protein
Keywords: Ionotropic glutamate receptor, Kainate receptor, GluR5 ligand-binding core, MEMBRANE PROTEIN
Deposited on 2004-12-22, released 2005-02-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-08-23, with a file datestamp of 2017-08-18.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ionotropic glutamate receptor 5
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22756 (1-115)
      • cloning artifact (0)
      • linker (116-117)
    • GB AAA02874 (118-End)
    Domains in SCOPe 2.07: d1ycja1, d1ycja2
  • Chain 'B':
    Compound: Ionotropic glutamate receptor 5
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22756 (1-115)
      • linker (116-117)
    • GB AAA02874 (118-256)
    Domains in SCOPe 2.07: d1ycjb_
  • Heterogens: SO4, GLU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ycjA (A:)
ganrtlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgk
ygaqndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpi
dsaddlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrv
lttdyallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqee
gklhmmkekwwrgngcp

    Sequence, based on observed residues (ATOM records): (download) 
    >1ycjA (A:)
ganrtlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgk
ygaqndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpi
dsaddlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrv
lttdyallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqee
gklhmmkekww

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ycjB (B:)
ganrtlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgk
ygaqndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpi
dsaddlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrv
lttdyallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqee
gklhmmkekwwrgngcp

    Sequence, based on observed residues (ATOM records): (download) 
    >1ycjB (B:)
anrtlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgky
gaqndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpid
saddlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrvl
ttdyallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqeeg
klhmmkekwwrgngcp