PDB entry 1ybo
View 1ybo on RCSB PDB site
Description: Crystal structure of the PDZ tandem of human syntenin with syndecan peptide
Class: structural protein
Keywords: PDZ domain, scaffolding protein, adhesion complex, STRUCTURAL PROTEIN
Deposited on
2004-12-21, released
2006-01-10
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-11, with a file datestamp of
2017-10-06.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Syntenin 1
Species: Homo sapiens [TaxId:9606]
Gene: SDCBP, MDA9, SYCL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1yboa1, d1yboa2, d1yboa3 - Chain 'B':
Compound: Syntenin 1
Species: Homo sapiens [TaxId:9606]
Gene: SDCBP, MDA9, SYCL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1ybob1, d1ybob2, d1ybob3 - Chain 'C':
Compound: syndecan-4
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: syndecan-4
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1yboA (A:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf
Sequence, based on observed residues (ATOM records): (download)
>1yboA (A:)
dprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagws
sdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaarn
glltehniceingqnviglkdsqiadilstsgtvvtitimpaf
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1yboB (B:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf
Sequence, based on observed residues (ATOM records): (download)
>1yboB (B:)
amdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencag
wssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaa
rnglltehniceingqnviglkdsqiadilstsgtvvtitimpa
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.