PDB entry 1ybk

View 1ybk on RCSB PDB site
Description: RHCC cocrystallized with CAPB
Class: protein binding
Keywords: right hand coiled coil, PROTEIN BINDING
Deposited on 2004-12-21, released 2005-01-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: 0.211
AEROSPACI score: 0.67 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tetrabrachion
    Species: Staphylothermus marinus [TaxId:2280]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q54436 (2-51)
      • cloning artifact (0-1)
    Domains in SCOPe 2.07: d1ybka1, d1ybka2
  • Chain 'B':
    Compound: tetrabrachion
    Species: Staphylothermus marinus [TaxId:2280]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q54436 (2-51)
      • cloning artifact (0-1)
    Domains in SCOPe 2.07: d1ybkb1, d1ybkb2
  • Chain 'C':
    Compound: tetrabrachion
    Species: Staphylothermus marinus [TaxId:2280]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ybkc_
  • Chain 'D':
    Compound: tetrabrachion
    Species: Staphylothermus marinus [TaxId:2280]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q54436 (2-51)
      • cloning artifact (0-1)
    Domains in SCOPe 2.07: d1ybkd1, d1ybkd2
  • Heterogens: SO4, BEQ, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ybkA (A:)
    gsiinetaddivyrltviiddryeslknlitlradrlemiindnvstilasi
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ybkB (B:)
    gsiinetaddivyrltviiddryeslknlitlradrlemiindnvstilasi
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1ybkC (C:)
    gsiinetaddivyrltviiddryeslknlitlradrlemiindnvstilasi
    

    Sequence, based on observed residues (ATOM records): (download)
    >1ybkC (C:)
    inetaddivyrltviiddryeslknlitlradrlemiindnvstilasi
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ybkD (D:)
    gsiinetaddivyrltviiddryeslknlitlradrlemiindnvstilasi