PDB entry 1ybf

View 1ybf on RCSB PDB site
Description: Crystal structure of AMP nucleosidase from Bacteroides thetaiotaomicron VPI-5482
Class: hydrolase
Keywords: Structural genomics, Protein Structure Initiative, PSI, New York SGX Research Center for Structural Genomics, NYSGXRC, T1840, AMP nucleosidase, Bacteroides thetaiotaomicron, HYDROLASE
Deposited on 2004-12-20, released 2005-01-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.228
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AMP nucleosidase
    Species: BACTEROIDES THETAIOTAOMICRON [TaxId:226186]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YBF
    Domains in SCOPe 2.07: d1ybfa_
  • Chain 'B':
    Compound: AMP nucleosidase
    Species: BACTEROIDES THETAIOTAOMICRON [TaxId:226186]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YBF
    Domains in SCOPe 2.07: d1ybfb_
  • Chain 'C':
    Compound: AMP nucleosidase
    Species: BACTEROIDES THETAIOTAOMICRON [TaxId:226186]
    Database cross-references and differences (RAF-indexed):
    • PDB 1YBF
    Domains in SCOPe 2.07: d1ybfc_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ybfA (A:)
mslktkqeivenwlprytqrqlidfepyilltnfshylhvfaehygvpivgehtsmpnas
aegvtlinfgmgsanaatimdllwaihpkaviflgkcgglklenalgdyllpiaairgeg
tsndylpeevpslpsfsvlraissaiqnkgkdywtgtvyttnrrvweydekfkdylrsth
asgvdmetatlmtvgfankipmgalllisdrpmfpegvkteesdqlvtdnfaeehlmlgi
daleiirenkssikhirfnweghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1ybfA (A:)
tkqeivenwlprytqrqlidfepyilltnfshylhvfaehygvpivgehtsmpnasaegv
tlinfgmgsanaatimdllwaihpkaviflgkcgglklenalgdyllpiaairgegtsnd
ylpeevpslpsfsvlraissaiqnkgkdywtgtvyttnrrvweydekfkdylrsthasgv
dmetatlmtvgfankipmgalllisdrpmfpegvkteesnfaeehlmlgidaleiirenk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ybfB (B:)
mslktkqeivenwlprytqrqlidfepyilltnfshylhvfaehygvpivgehtsmpnas
aegvtlinfgmgsanaatimdllwaihpkaviflgkcgglklenalgdyllpiaairgeg
tsndylpeevpslpsfsvlraissaiqnkgkdywtgtvyttnrrvweydekfkdylrsth
asgvdmetatlmtvgfankipmgalllisdrpmfpegvkteesdqlvtdnfaeehlmlgi
daleiirenkssikhirfnweghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1ybfB (B:)
tkqeivenwlprytqrqlidfepyilltnfshylhvfaehygvpivgehtsmpnasaegv
tlinfgmgsanaatimdllwaihpkaviflgkcgglklenalgdyllpiaairgegtsnd
ylpeevpslpsfsvlraissaiqnkgkdywtgtvyttnrrvweydekfkdylrsthasgv
dmetatlmtvgfankipmgalllisnfaeehlmlgidaleiirenkss

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ybfC (C:)
mslktkqeivenwlprytqrqlidfepyilltnfshylhvfaehygvpivgehtsmpnas
aegvtlinfgmgsanaatimdllwaihpkaviflgkcgglklenalgdyllpiaairgeg
tsndylpeevpslpsfsvlraissaiqnkgkdywtgtvyttnrrvweydekfkdylrsth
asgvdmetatlmtvgfankipmgalllisdrpmfpegvkteesdqlvtdnfaeehlmlgi
daleiirenkssikhirfnweghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1ybfC (C:)
ktkqeivenwlprytqrqlidfepyilltnfshylhvfaehygvpivgehtsmpnasaeg
vtlinfgmgsanaatimdllwaihpkaviflgkcgglalgdyllpiaairgegtsndylp
eevpslpsfsvlraissaiqnkgkdywtgtvyttnrrvweydekfkdylrsthasgvdme
tatlmtvgfankipmgalllisdrpmfpenfaeehlmlgidaleiirenk