SCOPe 2.07: Structural Classification of Proteins

PDB entry 1yar

View 1yar on RCSB PDB site
Description: Structure of Archeabacterial 20S proteasome mutant D9S- PA26 complex
Class: hydrolase/hydrolase activator
Keywords: proteasome 20S, PA26 proteasome activator 11S, HYDROLASE-HYDROLASE ACTIVATOR COMPLEX
Deposited on 2004-12-17, released 2005-07-26
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.182
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.07: d1yara_
Chain 'B':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.07: d1yarb_
Chain 'C':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.07: d1yarc_
Chain 'D':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.07: d1yard_
Chain 'E':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.07: d1yare_
Chain 'F':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.07: d1yarf_
Chain 'G':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.07: d1yarg_
Chain 'H':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.07: d1yarh_
Chain 'I':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.07: d1yari_
Chain 'J':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.07: d1yarj_
Chain 'K':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.07: d1yark_
Chain 'L':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.07: d1yarl_
Chain 'M':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.07: d1yarm_
Chain 'N':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.07: d1yarn_
Chain 'O':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.07: d1yaro_
Chain 'P':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.07: d1yarp_
Chain 'Q':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.07: d1yarq_
Chain 'R':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.07: d1yarr_
Chain 'S':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.07: d1yars_
Chain 'T':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.07: d1yart_
Chain 'U':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.07: d1yaru_
Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1yarA (A:)
mqqgqmaysraitvfspdgrlfqveyareavkkgstalgmkfangvllisdkkvrsrlie
qnsiekiqliddyvaavtsglvadarvlvdfarisaqqekvtygslvnienlvkrvadqm
qqytqyggvrpygvslifagidqigprlfdcdpagtineykataigsgkdavvsflerey
kenlpekeavtlgikalkssleegeelkapeiasitvgnkyriydqeevkkfl