PDB entry 1yae

View 1yae on RCSB PDB site
Description: Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
Class: membrane protein
Keywords: kainate receptor, glutamate receptor, MEMBRANE PROTEIN
Deposited on 2004-12-17, released 2005-02-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 3.11 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • GB CAA77778
    • GB CAA77778
    Domains in SCOPe 2.08: d1yaea1
  • Chain 'B':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • GB CAA77778
    • GB CAA77778
    Domains in SCOPe 2.08: d1yaeb1
  • Chain 'C':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • GB CAA77778
    • GB CAA77778
    Domains in SCOPe 2.08: d1yaec1
  • Chain 'D':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • GB CAA77778
    • GB CAA77778
    Domains in SCOPe 2.08: d1yaed1
  • Chain 'E':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • GB CAA77778
    • GB CAA77778
    Domains in SCOPe 2.08: d1yaee1
  • Chain 'F':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • GB CAA77778
    • GB CAA77778
  • Heterogens: DOQ, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1yaeA (A:)
    gkpanitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgfty
    eirlvedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgi
    silyrkpngtnpgvfsflnggslvprgsermespidsaddlakqtkieygavedgatmtf
    fkkskistydkmwafmssrrqsvlvksneegiqrvltsdyaflmesttiefvtqrncnlt
    qigglidskgygvgtpmgspyrdkitiailqlqeegklhmmkekwwrgngcpeeeskeas
    algvqnhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yaeA (A:)
    panitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyei
    rlvedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisi
    lyrkidsaddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksnee
    giqrvltsdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiail
    qlqeegklhmmkekwwrgngc
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1yaeB (B:)
    gkpanitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgfty
    eirlvedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgi
    silyrkpngtnpgvfsflnggslvprgsermespidsaddlakqtkieygavedgatmtf
    fkkskistydkmwafmssrrqsvlvksneegiqrvltsdyaflmesttiefvtqrncnlt
    qigglidskgygvgtpmgspyrdkitiailqlqeegklhmmkekwwrgngcpeeeskeas
    algvqnhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yaeB (B:)
    nitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirl
    vedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisily
    rkpnidsaddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksnee
    giqrvltsdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiail
    qlqeegklhmmkekwwrgngc
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1yaeC (C:)
    gkpanitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgfty
    eirlvedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgi
    silyrkpngtnpgvfsflnggslvprgsermespidsaddlakqtkieygavedgatmtf
    fkkskistydkmwafmssrrqsvlvksneegiqrvltsdyaflmesttiefvtqrncnlt
    qigglidskgygvgtpmgspyrdkitiailqlqeegklhmmkekwwrgngcpeeeskeas
    algvqnhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yaeC (C:)
    nitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirl
    vedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisily
    rkpdsaddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegi
    qrvltsdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailql
    qeegklhmmkekwwrgn
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1yaeD (D:)
    gkpanitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgfty
    eirlvedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgi
    silyrkpngtnpgvfsflnggslvprgsermespidsaddlakqtkieygavedgatmtf
    fkkskistydkmwafmssrrqsvlvksneegiqrvltsdyaflmesttiefvtqrncnlt
    qigglidskgygvgtpmgspyrdkitiailqlqeegklhmmkekwwrgngcpeeeskeas
    algvqnhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yaeD (D:)
    nitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirl
    vedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisily
    rkidsaddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegi
    qrvltsdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailql
    qeegklhmmkekwwrgngc
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1yaeE (E:)
    gkpanitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgfty
    eirlvedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgi
    silyrkpngtnpgvfsflnggslvprgsermespidsaddlakqtkieygavedgatmtf
    fkkskistydkmwafmssrrqsvlvksneegiqrvltsdyaflmesttiefvtqrncnlt
    qigglidskgygvgtpmgspyrdkitiailqlqeegklhmmkekwwrgngcpeeeskeas
    algvqnhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yaeE (E:)
    nitdslsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirl
    vedgkygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisily
    rkpidsaddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneeg
    iqrvltsdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailq
    lqeegklhmmkekwwrg
    

  • Chain 'F':
    No sequence available.