PDB entry 1y9e

View 1y9e on RCSB PDB site
Description: Crystal structure of Bacillus subtilis protein yhfP with NAD bound
Class: structural genomics, unknown function
Keywords: Hypothetical protein yhfP, Bacillus subtilis, alcohol dehydrogenase activity, zinc-dependent, Structural Genomics, Protein Structure Initiative, PSI, New York Structural GenomiX Research Consortium, NYSGXRC, PSI, Protein Structure Initiative
Deposited on 2004-12-15, released 2004-12-21
The last revision prior to the SCOP 1.75 freeze date was dated 2005-01-25, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.227
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein yhfP
    Species: Bacillus subtilis
    Gene: YHFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07615 (Start-329)
      • modified residue (125)
      • modified residue (169)
      • modified residue (277)
      • modified residue (287)
    Domains in SCOP 1.75: d1y9ea1, d1y9ea2
  • Chain 'B':
    Compound: hypothetical protein yhfP
    Species: Bacillus subtilis
    Gene: YHFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07615 (Start-329)
      • modified residue (125)
      • modified residue (169)
      • modified residue (277)
      • modified residue (287)
    Domains in SCOP 1.75: d1y9eb1, d1y9eb2
  • Chain 'C':
    Compound: hypothetical protein yhfP
    Species: Bacillus subtilis
    Gene: YHFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07615 (Start-329)
      • modified residue (125)
      • modified residue (169)
      • modified residue (277)
      • modified residue (287)
    Domains in SCOP 1.75: d1y9ec1, d1y9ec2
  • Chain 'D':
    Compound: hypothetical protein yhfP
    Species: Bacillus subtilis
    Gene: YHFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07615 (Start-329)
      • modified residue (125)
      • modified residue (169)
      • modified residue (277)
      • modified residue (287)
    Domains in SCOP 1.75: d1y9ed1, d1y9ed2
  • Chain 'E':
    Compound: hypothetical protein yhfP
    Species: Bacillus subtilis
    Gene: YHFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07615 (Start-329)
      • modified residue (125)
      • modified residue (169)
      • modified residue (277)
      • modified residue (287)
    Domains in SCOP 1.75: d1y9ee1, d1y9ee2
  • Chain 'F':
    Compound: hypothetical protein yhfP
    Species: Bacillus subtilis
    Gene: YHFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07615 (Start-329)
      • modified residue (125)
      • modified residue (169)
      • modified residue (277)
      • modified residue (287)
    Domains in SCOP 1.75: d1y9ef1, d1y9ef2
  • Heterogens: NAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1y9eA (A:)
mstlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivre
yplilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnl
slkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvva
stgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqyg
gsvavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqllti
vdrevsleetpgalkdilqnriqgrvivkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9eA (A:)
stlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivrey
plilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnls
lkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvvas
tgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqygg
svavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqlltiv
drevsleetpgalkdilqnriqgrvivkl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1y9eB (B:)
mstlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivre
yplilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnl
slkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvva
stgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqyg
gsvavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqllti
vdrevsleetpgalkdilqnriqgrvivkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9eB (B:)
stlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivrey
plilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnls
lkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvvas
tgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqygg
svavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqlltiv
drevsleetpgalkdilqnriqgrvivkl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1y9eC (C:)
mstlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivre
yplilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnl
slkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvva
stgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqyg
gsvavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqllti
vdrevsleetpgalkdilqnriqgrvivkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9eC (C:)
stlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivrey
plilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnls
lkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvvas
tgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqygg
svavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqlltiv
drevsleetpgalkdilqnriqgrvivkl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1y9eD (D:)
mstlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivre
yplilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnl
slkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvva
stgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqyg
gsvavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqllti
vdrevsleetpgalkdilqnriqgrvivkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9eD (D:)
stlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivrey
plilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnls
lkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvvas
tgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqygg
svavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqlltiv
drevsleetpgalkdilqnriqgrvivkl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1y9eE (E:)
mstlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivre
yplilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnl
slkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvva
stgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqyg
gsvavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqllti
vdrevsleetpgalkdilqnriqgrvivkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9eE (E:)
stlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivrey
plilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnls
lkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvvas
tgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqygg
svavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqlltiv
drevsleetpgalkdilqnriqgrvivkl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1y9eF (F:)
mstlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivre
yplilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnl
slkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvva
stgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqyg
gsvavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqllti
vdrevsleetpgalkdilqnriqgrvivkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9eF (F:)
stlfqalqaeknaddvsvhvktistedlpkdgvlikvaysginykdglagkaggnivrey
plilgidaagtvvssndprfaegdeviatsyelgvsrdgglseyasvpgdwlvplpqnls
lkeamvygtagftaalsvhrleqnglspekgsvlvtgatggvggiavsmlnkrgydvvas
tgnreaadylkqlgasevisredvydgtlkalskqqwqgavdpvggkqlasllskiqygg
svavsgltgggevpatvypfilrgvsllgidsvycpmdvraavwermssdlkpdqlltiv
drevsleetpgalkdilqnriqgrvivkl