PDB entry 1y9d

View 1y9d on RCSB PDB site
Description: Pyruvate Oxidase variant V265A from Lactobacillus plantarum
Class: oxidoreductase
Keywords: OXIDOREDUCTASE, Pyruvate oxidase
Deposited on 2004-12-15, released 2005-04-05
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.181
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyruvate oxidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: pox5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P37063
      • engineered (264)
    Domains in SCOPe 2.04: d1y9da1, d1y9da2, d1y9da3
  • Chain 'B':
    Compound: Pyruvate oxidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: pox5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P37063
      • engineered (264)
    Domains in SCOPe 2.04: d1y9db1, d1y9db2, d1y9db3
  • Chain 'C':
    Compound: Pyruvate oxidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: pox5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P37063
      • engineered (264)
    Domains in SCOPe 2.04: d1y9dc1, d1y9dc2, d1y9dc3
  • Chain 'D':
    Compound: Pyruvate oxidase
    Species: Lactobacillus plantarum [TaxId:1590]
    Gene: pox5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P37063
      • engineered (264)
    Domains in SCOPe 2.04: d1y9dd1, d1y9dd2, d1y9dd3
  • Heterogens: MG, SO4, NA, TPP, FAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1y9dA (A:)
mvmkqtkqtnilagaavikvleawgvdhlygipggsinsimdalsaerdrihyiqvrhee
vgamaaaadakltgkigvcfgsagpggthlmnglydaredhvpvlaligqfgttgmnmdt
fqemnenpiyadvadynvtavnaatlphvideairrayahqgvavvqipvdlpwqqipae
dwyasansyqtpllpepdvqavtrltqtllaaerpliyygigarkagkeleqlsktlkip
lmstypakgivadrypaylgsanraaqkpanealaqadvvlfvgnnypfaevskafkntr
yflqididpaklgkrhktdiavladaqktlaailaqvserestpwwqanlanvknwrayl
asledkqegplqayqvlravnkiaepdaiysidvgdinlnanrhlkltpsnrhitsnlfa
tmgvgipgaiaaklnyperqvfnlagdggasmtmqdlatqvqyhlpvinvvftncqygfi
kdeqedtnqndfigvefndidfskiadgvhmqafrvnkieqlpdvfeqakaiaqhepvli
davitgdrplpaeklrldsamssaadieafkqryeaqdlqplstylkqfglddlqhqigq
ggf

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9dA (A:)
tnilagaavikvleawgvdhlygipggsinsimdalsaerdrihyiqvrheevgamaaaa
dakltgkigvcfgsagpggthlmnglydaredhvpvlaligqfgttgemnenpiyadvad
ynvtavnaatlphvideairrayahqgvavvqipvdlpwqqipaedwpllpepdvqavtr
ltqtllaaerpliyygigarkagkeleqlsktlkiplmstypakgivadrypaylgsanr
aaqkpanealaqadvvlfvgnnntryflqididpaklgkrhktdiavladaqktlaaila
qvserestpwwqanlanvknwraylasledkqegplqayqvlravnkiaepdaiysidvg
dinlnanrhlkltpsnrhitsnlfatmgvgipgaiaaklnyperqvfnlagdggasmtmq
dlatqvqyhlpvinvvftncqygfikdeqedtnqndfigvefndidfskiadgvhmqafr
vnkieqlpdvfeqakaiaqhepvlidavitgdrplpaeklrldsamssaadieafkqrye
aqdlqplstylkqfgldd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1y9dB (B:)
mvmkqtkqtnilagaavikvleawgvdhlygipggsinsimdalsaerdrihyiqvrhee
vgamaaaadakltgkigvcfgsagpggthlmnglydaredhvpvlaligqfgttgmnmdt
fqemnenpiyadvadynvtavnaatlphvideairrayahqgvavvqipvdlpwqqipae
dwyasansyqtpllpepdvqavtrltqtllaaerpliyygigarkagkeleqlsktlkip
lmstypakgivadrypaylgsanraaqkpanealaqadvvlfvgnnypfaevskafkntr
yflqididpaklgkrhktdiavladaqktlaailaqvserestpwwqanlanvknwrayl
asledkqegplqayqvlravnkiaepdaiysidvgdinlnanrhlkltpsnrhitsnlfa
tmgvgipgaiaaklnyperqvfnlagdggasmtmqdlatqvqyhlpvinvvftncqygfi
kdeqedtnqndfigvefndidfskiadgvhmqafrvnkieqlpdvfeqakaiaqhepvli
davitgdrplpaeklrldsamssaadieafkqryeaqdlqplstylkqfglddlqhqigq
ggf

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9dB (B:)
tnilagaavikvleawgvdhlygipggsinsimdalsaerdrihyiqvrheevgamaaaa
dakltgkigvcfgsagpggthlmnglydaredhvpvlaligqfgttgmqemnenpiyadv
adynvtavnaatlphvideairrayahqgvavvqipvdlpwqqipaedwyqtpllpepdv
qavtrltqtllaaerpliyygigarkagkeleqlsktlkiplmstypakgivadrypayl
gsanraaqkpanealaqadvvlfvgnnypafkntryflqididpaklgkrhktdiavlad
aqktlaailaqvserestpwwqanlanvknwraylasledkqegplqayqvlravnkiae
pdaiysidvgdinlnanrhlkltpsnrhitsnlfatmgvgipgaiaaklnyperqvfnla
gdggasmtmqdlatqvqyhlpvinvvftncqygfikdeqedtnqndfigvefndidfski
adgvhmqafrvnkieqlpdvfeqakaiaqhepvlidavitgdrplpaeklrldsamssaa
dieafkqryeaqdlqplstylkqfglddlqhq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1y9dC (C:)
mvmkqtkqtnilagaavikvleawgvdhlygipggsinsimdalsaerdrihyiqvrhee
vgamaaaadakltgkigvcfgsagpggthlmnglydaredhvpvlaligqfgttgmnmdt
fqemnenpiyadvadynvtavnaatlphvideairrayahqgvavvqipvdlpwqqipae
dwyasansyqtpllpepdvqavtrltqtllaaerpliyygigarkagkeleqlsktlkip
lmstypakgivadrypaylgsanraaqkpanealaqadvvlfvgnnypfaevskafkntr
yflqididpaklgkrhktdiavladaqktlaailaqvserestpwwqanlanvknwrayl
asledkqegplqayqvlravnkiaepdaiysidvgdinlnanrhlkltpsnrhitsnlfa
tmgvgipgaiaaklnyperqvfnlagdggasmtmqdlatqvqyhlpvinvvftncqygfi
kdeqedtnqndfigvefndidfskiadgvhmqafrvnkieqlpdvfeqakaiaqhepvli
davitgdrplpaeklrldsamssaadieafkqryeaqdlqplstylkqfglddlqhqigq
ggf

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9dC (C:)
tnilagaavikvleawgvdhlygipggsinsimdalsaerdrihyiqvrheevgamaaaa
dakltgkigvcfgsagpggthlmnglydaredhvpvlaligqfgttgemnenpiyadvad
ynvtavnaatlphvideairrayahqgvavvqipvdlpwqqipaelpepdvqavtrltqt
llaaerpliyygigarkagkeleqlsktlkiplmstypakgivadrypaylgsanraaqk
panealaqadvvlfvgnnykntryflqididpaklgkrhktdiavladaqktlaailaqv
serestpwwqanlanvknwraylasledkqegplqayqvlravnkiaepdaiysidvgdi
nlnanrhlkltpsnrhitsnlfatmgvgipgaiaaklnyperqvfnlagdggasmtmqdl
atqvqyhlpvinvvftncqygfikdeqedtnqndfigvefndidfskiadgvhmqafrvn
kieqlpdvfeqakaiaqhepvlidavitgdrplpaeklrldsamssaadieafkqryeaq
dlqplstylkqfgldd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1y9dD (D:)
mvmkqtkqtnilagaavikvleawgvdhlygipggsinsimdalsaerdrihyiqvrhee
vgamaaaadakltgkigvcfgsagpggthlmnglydaredhvpvlaligqfgttgmnmdt
fqemnenpiyadvadynvtavnaatlphvideairrayahqgvavvqipvdlpwqqipae
dwyasansyqtpllpepdvqavtrltqtllaaerpliyygigarkagkeleqlsktlkip
lmstypakgivadrypaylgsanraaqkpanealaqadvvlfvgnnypfaevskafkntr
yflqididpaklgkrhktdiavladaqktlaailaqvserestpwwqanlanvknwrayl
asledkqegplqayqvlravnkiaepdaiysidvgdinlnanrhlkltpsnrhitsnlfa
tmgvgipgaiaaklnyperqvfnlagdggasmtmqdlatqvqyhlpvinvvftncqygfi
kdeqedtnqndfigvefndidfskiadgvhmqafrvnkieqlpdvfeqakaiaqhepvli
davitgdrplpaeklrldsamssaadieafkqryeaqdlqplstylkqfglddlqhqigq
ggf

    Sequence, based on observed residues (ATOM records): (download) 
    >1y9dD (D:)
tnilagaavikvleawgvdhlygipggsinsimdalsaerdrihyiqvrheevgamaaaa
dakltgkigvcfgsagpggthlmnglydaredhvpvlaligqfgttgemnenpiyadvad
ynvtavnaatlphvideairrayahqgvavvqipvdlpwqqipaedwyasapepdvqavt
rltqtllaaerpliyygigarkagkeleqlsktlkiplmstypakgivadrypaylgsan
raaqkpanealaqadvvlfvgnnyntryflqididpaklgkrhktdiavladaqktlaai
laqvserestpwwqanlanvknwraylasledkqegplqayqvlravnkiaepdaiysid
vgdinlnanrhlkltpsnrhitsnlfatmgvgipgaiaaklnyperqvfnlagdggasmt
mqdlatqvqyhlpvinvvftncqygfikdeqedtnqndfigvefndidfskiadgvhmqa
frvnkieqlpdvfeqakaiaqhepvlidavitgdrplpaeklrldsamssaadieafkqr
yeaqdlqplstylkqfgldd