PDB entry 1y7b

View 1y7b on RCSB PDB site
Description: beta-d-xylosidase, a family 43 glycoside hydrolase
Class: hydrolase
Keywords: beta-propeller, beta-sandwich, structural genomics, protein structure initative, PSI, New York SGX Research Center for Structural Genomics, NYSGXRC, Protein Structure Initiative, HYDROLASE
Deposited on 2004-12-08, released 2005-01-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-xylosidase, family 43 glycosyl hydrolase
    Species: Clostridium acetobutylicum [TaxId:272562]
    Gene: xynD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97DM1 (Start-534)
      • cloning artifact (1-2)
      • cloning artifact (534)
    Domains in SCOPe 2.08: d1y7ba1, d1y7ba2, d1y7ba3, d1y7ba4
  • Chain 'B':
    Compound: Beta-xylosidase, family 43 glycosyl hydrolase
    Species: Clostridium acetobutylicum [TaxId:272562]
    Gene: xynD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97DM1 (Start-534)
      • cloning artifact (1-2)
      • cloning artifact (534)
    Domains in SCOPe 2.08: d1y7bb1, d1y7bb2, d1y7bb3, d1y7bb4
  • Chain 'C':
    Compound: Beta-xylosidase, family 43 glycosyl hydrolase
    Species: Clostridium acetobutylicum [TaxId:272562]
    Gene: xynD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97DM1 (Start-534)
      • cloning artifact (1-2)
      • cloning artifact (534)
    Domains in SCOPe 2.08: d1y7bc1, d1y7bc2, d1y7bc3, d1y7bc4
  • Chain 'D':
    Compound: Beta-xylosidase, family 43 glycosyl hydrolase
    Species: Clostridium acetobutylicum [TaxId:272562]
    Gene: xynD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97DM1 (Start-534)
      • cloning artifact (1-2)
      • cloning artifact (534)
    Domains in SCOPe 2.08: d1y7bd1, d1y7bd2, d1y7bd3, d1y7bd4
  • Heterogens: CA, SO4, EPE, PGE, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1y7bA (A:)
msliknpilrgfnpdpsicradtdyyiatstfewfpgvqihhskdlvnwhlvahplnrts
lldmkgnpnsggiwapdlsyhdgkfwliytdvkvtdgmwkdchnylttcesvdgvwsdpi
tlngsgfdaslfhdndgkkylvnmywdqrtynhnfygivlqeysdkekkligkakiiykg
tdikytegphiyhigdyyylftaeggttyehsetvarsknidgpyeidpeyplltswhdp
rnslqkcghaslvhthtdewylahlvgrplpvgnqpvleqrgycplgretsiqriewvdn
wprvvggkqgsvnveapkipevkwektydekdnfdsdklninfqslriplteniaslkak
kgnlrlygkesltstftqafiarrwqsfkfdastsvsfspdtfqqaagltcyyntenwst
iqvtwnedkgrvidivccdnfhfdmplksnvipipkdveyihlkvevrvetyqysysfdg
inwskvpaifesrklsddyvqgggfftgafvginciditgnnkpadfdyfcykeeghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >1y7bA (A:)
sliknpilrgfnpdpsicradtdyyiatstfewfpgvqihhskdlvnwhlvahplnrtsl
ldmkgnpnsggiwapdlsyhdgkfwliytdvkvtdgmwkdchnylttcesvdgvwsdpit
lngsgfdaslfhdndgkkylvnmywdqrtynhnfygivlqeysdkekkligkakiiykgt
dikytegphiyhigdyyylftaeggttyehsetvarsknidgpyeidpeyplltswhdpr
nslqkcghaslvhthtdewylahlvgrplpvgnqpvleqrgycplgretsiqriewvdnw
prvvggkqgsvnveapkipevkwektydekdnfdsdklninfqslriplteniaslkakk
gnlrlygkesltstftqafiarrwqsfkfdastsvsfspdtfqqaagltcyyntenwsti
qvtwnedkgrvidivccdnfhfdmplksnvipipkdveyihlkvevrvetyqysysfdgi
nwskvpaifesrklsddyvqgggfftgafvginciditgnnkpadfdyfcykee

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1y7bB (B:)
msliknpilrgfnpdpsicradtdyyiatstfewfpgvqihhskdlvnwhlvahplnrts
lldmkgnpnsggiwapdlsyhdgkfwliytdvkvtdgmwkdchnylttcesvdgvwsdpi
tlngsgfdaslfhdndgkkylvnmywdqrtynhnfygivlqeysdkekkligkakiiykg
tdikytegphiyhigdyyylftaeggttyehsetvarsknidgpyeidpeyplltswhdp
rnslqkcghaslvhthtdewylahlvgrplpvgnqpvleqrgycplgretsiqriewvdn
wprvvggkqgsvnveapkipevkwektydekdnfdsdklninfqslriplteniaslkak
kgnlrlygkesltstftqafiarrwqsfkfdastsvsfspdtfqqaagltcyyntenwst
iqvtwnedkgrvidivccdnfhfdmplksnvipipkdveyihlkvevrvetyqysysfdg
inwskvpaifesrklsddyvqgggfftgafvginciditgnnkpadfdyfcykeeghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >1y7bB (B:)
sliknpilrgfnpdpsicradtdyyiatstfewfpgvqihhskdlvnwhlvahplnrtsl
ldmkgnpnsggiwapdlsyhdgkfwliytdvkvtdgmwkdchnylttcesvdgvwsdpit
lngsgfdaslfhdndgkkylvnmywdqrtynhnfygivlqeysdkekkligkakiiykgt
dikytegphiyhigdyyylftaeggttyehsetvarsknidgpyeidpeyplltswhdpr
nslqkcghaslvhthtdewylahlvgrplpvgnqpvleqrgycplgretsiqriewvdnw
prvvggkqgsvnveapkipevkwektydekdnfdsdklninfqslriplteniaslkakk
gnlrlygkesltstftqafiarrwqsfkfdastsvsfspdtfqqaagltcyyntenwsti
qvtwnedkgrvidivccdnfhfdmplksnvipipkdveyihlkvevrvetyqysysfdgi
nwskvpaifesrklsddyvqgggfftgafvginciditgnnkpadfdyfcykee

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1y7bC (C:)
msliknpilrgfnpdpsicradtdyyiatstfewfpgvqihhskdlvnwhlvahplnrts
lldmkgnpnsggiwapdlsyhdgkfwliytdvkvtdgmwkdchnylttcesvdgvwsdpi
tlngsgfdaslfhdndgkkylvnmywdqrtynhnfygivlqeysdkekkligkakiiykg
tdikytegphiyhigdyyylftaeggttyehsetvarsknidgpyeidpeyplltswhdp
rnslqkcghaslvhthtdewylahlvgrplpvgnqpvleqrgycplgretsiqriewvdn
wprvvggkqgsvnveapkipevkwektydekdnfdsdklninfqslriplteniaslkak
kgnlrlygkesltstftqafiarrwqsfkfdastsvsfspdtfqqaagltcyyntenwst
iqvtwnedkgrvidivccdnfhfdmplksnvipipkdveyihlkvevrvetyqysysfdg
inwskvpaifesrklsddyvqgggfftgafvginciditgnnkpadfdyfcykeeghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >1y7bC (C:)
sliknpilrgfnpdpsicradtdyyiatstfewfpgvqihhskdlvnwhlvahplnrtsl
ldmkgnpnsggiwapdlsyhdgkfwliytdvkvtdgmwkdchnylttcesvdgvwsdpit
lngsgfdaslfhdndgkkylvnmywdqrtynhnfygivlqeysdkekkligkakiiykgt
dikytegphiyhigdyyylftaeggttyehsetvarsknidgpyeidpeyplltswhdpr
nslqkcghaslvhthtdewylahlvgrplpvgnqpvleqrgycplgretsiqriewvdnw
prvvggkqgsvnveapkipevkwektydekdnfdsdklninfqslriplteniaslkakk
gnlrlygkesltstftqafiarrwqsfkfdastsvsfspdtfqqaagltcyyntenwsti
qvtwnedkgrvidivccdnfhfdmplksnvipipkdveyihlkvevrvetyqysysfdgi
nwskvpaifesrklsddyvqgggfftgafvginciditgnnkpadfdyfcykee

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1y7bD (D:)
msliknpilrgfnpdpsicradtdyyiatstfewfpgvqihhskdlvnwhlvahplnrts
lldmkgnpnsggiwapdlsyhdgkfwliytdvkvtdgmwkdchnylttcesvdgvwsdpi
tlngsgfdaslfhdndgkkylvnmywdqrtynhnfygivlqeysdkekkligkakiiykg
tdikytegphiyhigdyyylftaeggttyehsetvarsknidgpyeidpeyplltswhdp
rnslqkcghaslvhthtdewylahlvgrplpvgnqpvleqrgycplgretsiqriewvdn
wprvvggkqgsvnveapkipevkwektydekdnfdsdklninfqslriplteniaslkak
kgnlrlygkesltstftqafiarrwqsfkfdastsvsfspdtfqqaagltcyyntenwst
iqvtwnedkgrvidivccdnfhfdmplksnvipipkdveyihlkvevrvetyqysysfdg
inwskvpaifesrklsddyvqgggfftgafvginciditgnnkpadfdyfcykeeghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >1y7bD (D:)
sliknpilrgfnpdpsicradtdyyiatstfewfpgvqihhskdlvnwhlvahplnrtsl
ldmkgnpnsggiwapdlsyhdgkfwliytdvkvtdgmwkdchnylttcesvdgvwsdpit
lngsgfdaslfhdndgkkylvnmywdqrtynhnfygivlqeysdkekkligkakiiykgt
dikytegphiyhigdyyylftaeggttyehsetvarsknidgpyeidpeyplltswhdpr
nslqkcghaslvhthtdewylahlvgrplpvgnqpvleqrgycplgretsiqriewvdnw
prvvggkqgsvnveapkipevkwektydekdnfdsdklninfqslriplteniaslkakk
gnlrlygkesltstftqafiarrwqsfkfdastsvsfspdtfqqaagltcyyntenwsti
qvtwnedkgrvidivccdnfhfdmplksnvipipkdveyihlkvevrvetyqysysfdgi
nwskvpaifesrklsddyvqgggfftgafvginciditgnnkpadfdyfcykee