PDB entry 1y6f

View 1y6f on RCSB PDB site
Description: alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic site
Deposited on 2004-12-06, released 2005-08-30
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.197
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA alpha-glucosyltransferase
    Species: Enterobacteria phage T4 sensu lato [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04519 (3-402)
      • cloning artifact (0-2)
  • Chain 'B':
    Compound: DNA alpha-glucosyltransferase
    Species: Enterobacteria phage T4 sensu lato [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04519 (3-402)
      • cloning artifact (1-2)
  • Chain 'C':
    Compound: 5'-d(*gp*ap*tp*ap*cp*tp*(3dr)p*ap*gp*ap*tp*ap*g)-3'
  • Chain 'D':
    Compound: 5'-d(*cp*tp*ap*tp*cp*tp*gp*ap*gp*tp*ap*tp*c)-3'
  • Heterogens: UPG, UDP, GOL, PEG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >1y6fA (A:)
    mgsmricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsi
    pvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhs
    vlslrrnlgleetvrradvifshsdngdfnkvlmkewypetvslfddieeaptvynfqpp
    mdivkvrstywkdvseinmninrwigrtttwkgfyqmfdfhekflkpagkstvmeglers
    pafiaikekgipyeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyqlskln
    qkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestf
    erikelssdralydrerekayeflyqhqdssfcfkeqfdiitk
    

    Sequence, based on observed residues (ATOM records):
    >1y6fA (A:)
    mgsmricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsi
    pvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhs
    vlslrrnlgleetvrradvifshsdngdfnkvlmkewypeeaptvynfqppmdivkvrst
    ywkdvseinmninrwigrtttwkgfyqmfdfhekflkpagkstvmeglerspafiaikek
    gipyeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyqlsklnqkylqrsle
    ythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssd
    ralydrerekayeflyqhqdssfcfkeqfdiitk
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >1y6fB (B:)
    mgsmricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsi
    pvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhs
    vlslrrnlgleetvrradvifshsdngdfnkvlmkewypetvslfddieeaptvynfqpp
    mdivkvrstywkdvseinmninrwigrtttwkgfyqmfdfhekflkpagkstvmeglers
    pafiaikekgipyeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyqlskln
    qkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestf
    erikelssdralydrerekayeflyqhqdssfcfkeqfdiitk
    

    Sequence, based on observed residues (ATOM records):
    >1y6fB (B:)
    gsmricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsip
    vilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsv
    lslrrnlgleetvrradvifshsdngdfnkvlmkewypeteaptvynfqppmdivkvrst
    ywkdvseinmninrwigrtttwkgfyqmfdfhekflkpagkstvmeglerspafiaikek
    gipyeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyqlsklnqkylqrsle
    ythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssd
    ralydrerekayeflyqhqdssfcfkeqfdiitk
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.