PDB entry 1y69

View 1y69 on RCSB PDB site
Description: RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans
Class: ribosome
Keywords: ribosome, 50s, rrf, recycling factor
Deposited on 2004-12-04, released 2005-03-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-08-02, with a file datestamp of 2017-07-28.
Experiment type: XRAY
Resolution: 3.33 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: 23S ribosomal RNA
    Species: Deinococcus radiodurans R1 [TaxId:243230]
    Gene:
  • Chain '8':
    Compound: Ribosome-recycling factor
    Species: Escherichia coli [TaxId:83333]
    Gene: frr, rrf, b0172, JW0167
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A805 (0-29)
      • linker (30-32)
    • Uniprot P0A805 (33-112)
  • Chain '9':
    Compound: 5S ribosomal RNA
    Species: Deinococcus radiodurans R1 [TaxId:243230]
    Gene:
  • Chain 'K':
    Compound: 50S ribosomal protein L16
    Species: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) [TaxId:243230]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1y69k1
  • Chain 'U':
    Compound: 50S ribosomal protein L27
    Species: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) [TaxId:243230]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1y69u1

PDB Chain Sequences:

  • Chain '0':
    No sequence available.

  • Chain '8':
    No sequence available.

  • Chain '9':
    No sequence available.

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >1y69K (K:)
    mllpkrtkfrkqfrgrmtgdakggdyvafgdygliamepawiksnqieacrivmsrhfrr
    ggkiyirifpdkpvtkkpaetrmgkgkgaveywvsvvkpgrvmfevagvteeqakeafrl
    aghklpiqtkmvkrevydeaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >1y69K (K:)
    krtkfrkqfrgrmtgdakggdyvafgdygliamepawiksnqieacrivmsrhfrrggki
    yirifpdkpvtkkpaetrmgkgkgaveywvsvvkpgrvmfevagvteeqakeafrlaghk
    lpiqtkmvkrevydea
    

  • Chain 'U':
    Sequence, based on SEQRES records: (download)
    >1y69U (U:)
    mahkkgvgsskngrdsnpkylgvkkfggevvkagnilvrqrgtkfkagqgvgmgrdhtlf
    alsdgkvvfinkgkgarfisieaaqtevaad
    

    Sequence, based on observed residues (ATOM records): (download)
    >1y69U (U:)
    ahkkgvgsskngrdsnpkylgvkkfggevvkagnilvrqrgtkfkagqgvgmgrdhtlfa
    lsdgkvvfinkgkgarfisieaaq