SCOPe 2.08: Structural Classification of Proteins

PDB entry 1xp4

View 1xp4 on RCSB PDB site
Description: Crystal structure of a peptidoglycan synthesis regulatory factor (PBP3) from Streptococcus pneumoniae
Class: hydrolase
Keywords: five-stranded antiparallel beta-sheet, omega-like loop, HYDROLASE
Deposited on 2004-10-08, released 2004-11-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.237
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: d-alanyl-d-alanine carboxypeptidase
Species: Streptococcus pneumoniae [TaxId:171101]
Gene: DACA
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DQ99
  - modified residue (85)
  - modified residue (125-126)
  - modified residue (200)
  - modified residue (208)
  - modified residue (212)
  - modified residue (243)
  - modified residue (270)
  - modified residue (370)
Domains in SCOPe 2.08: d1xp4a1, d1xp4a2
Chain 'B':
Compound: d-alanyl-d-alanine carboxypeptidase
Species: Streptococcus pneumoniae [TaxId:171101]
Gene: DACA
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DQ99
  - modified residue (85)
  - modified residue (125-126)
  - modified residue (200)
  - modified residue (208)
  - modified residue (212)
  - modified residue (243)
  - modified residue (270)
  - modified residue (370)
Domains in SCOPe 2.08: d1xp4b1, d1xp4b2
Chain 'C':
Compound: d-alanyl-d-alanine carboxypeptidase
Species: Streptococcus pneumoniae [TaxId:171101]
Gene: DACA
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DQ99
  - modified residue (85)
  - modified residue (125-126)
  - modified residue (200)
  - modified residue (208)
  - modified residue (212)
  - modified residue (243)
  - modified residue (270)
  - modified residue (370)
Domains in SCOPe 2.08: d1xp4c1, d1xp4c2
Chain 'D':
Compound: d-alanyl-d-alanine carboxypeptidase
Species: Streptococcus pneumoniae [TaxId:171101]
Gene: DACA
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DQ99
  - modified residue (85)
  - modified residue (125-126)
  - modified residue (200)
  - modified residue (208)
  - modified residue (212)
  - modified residue (243)
  - modified residue (270)
  - modified residue (370)
Domains in SCOPe 2.08: d1xp4d1, d1xp4d2
Heterogens: SO4, IOD, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1xp4A (A:)
gvstavaqdftiaakhaiaveantgkilyekdatqpveiasitklitvylvyealengsi
tlstpvdisdypyqlttnseasnipmearnytveelleatlvssansaaialaekiagse
kdfvdmmrakllewgiqdatvvnttglnnetlgdniypgskkdeenklsaydvaivarnl
ikkypqvleitkkpsstfagmtitstnymlegmpayrggfdglktgttdkagesfvgttv
ekgmrvitvvlnadhqdnnpyarftatsslmdyisstftlrkivqqgdayqdskapvqdg
kedtviavapediyliervgnqssqsvqftpdskaipapleagtvvghltyedkdligqg
yitterpsfemvadkkiek

Sequence, based on observed residues (ATOM records): (download)

>1xp4A (A:)
ftiaakhaiaveantgkilyekdatqpveiasitklitvylvyealengsitlstpvdis
dypyqlttnseasnipmearnytveelleatlvssansaaialaekiagsekdfvdmmra
kllewgiqdatvvnttglnnetlgdniypgskkdeenklsaydvaivarnlikkypqvle
itkkpsstfagmtitstnymlegmpayrggfdglktgttdkagesfvgttvekgmrvitv
vlnadhqdnnpyarftatsslmdyisstftlrkivqqgdayqdskapvqdgkedtviava
pediyliervgnqssqsvqftpdskaipapleagtvvghltyedkdligqgyitterpsf
emvadkkie

Chain 'B':
Sequence, based on SEQRES records: (download)

>1xp4B (B:)
gvstavaqdftiaakhaiaveantgkilyekdatqpveiasitklitvylvyealengsi
tlstpvdisdypyqlttnseasnipmearnytveelleatlvssansaaialaekiagse
kdfvdmmrakllewgiqdatvvnttglnnetlgdniypgskkdeenklsaydvaivarnl
ikkypqvleitkkpsstfagmtitstnymlegmpayrggfdglktgttdkagesfvgttv
ekgmrvitvvlnadhqdnnpyarftatsslmdyisstftlrkivqqgdayqdskapvqdg
kedtviavapediyliervgnqssqsvqftpdskaipapleagtvvghltyedkdligqg
yitterpsfemvadkkiek

Sequence, based on observed residues (ATOM records): (download)

>1xp4B (B:)
ftiaakhaiaveantgkilyekdatqpveiasitklitvylvyealengsitlstpvdis
dypyqlttnseasnipmearnytveelleatlvssansaaialaekiagsekdfvdmmra
kllewgiqdatvvnttglnnetlgdniypgskkdeenklsaydvaivarnlikkypqvle
itkkpsstfagmtitstnymlegmpayrggfdglktgttdkagesfvgttvekgmrvitv
vlnadhpyarftatsslmdyisstftlrkivqqgdayqdsiavapediyliervgnqssq
svqftpdvvghltyedkdligqgyitterpsfemvadkk

Chain 'C':
Sequence, based on SEQRES records: (download)

>1xp4C (C:)
gvstavaqdftiaakhaiaveantgkilyekdatqpveiasitklitvylvyealengsi
tlstpvdisdypyqlttnseasnipmearnytveelleatlvssansaaialaekiagse
kdfvdmmrakllewgiqdatvvnttglnnetlgdniypgskkdeenklsaydvaivarnl
ikkypqvleitkkpsstfagmtitstnymlegmpayrggfdglktgttdkagesfvgttv
ekgmrvitvvlnadhqdnnpyarftatsslmdyisstftlrkivqqgdayqdskapvqdg
kedtviavapediyliervgnqssqsvqftpdskaipapleagtvvghltyedkdligqg
yitterpsfemvadkkiek

Sequence, based on observed residues (ATOM records): (download)

>1xp4C (C:)
ftiaakhaiaveantgkilyekdatqpveiasitklitvylvyealengsitlstpvdis
dypyqlttnseasnipmearnytveelleatlvssansaaialaekiagsekdfvdmmra
kllewgiqdatvvnttglnnetlgdniypgskkdeenklsaydvaivarnlikkypqvle
itkkpsstfagmtitstnymlegmpayrggfdglktgttdkagesfvgttvekgmrvitv
vlnadhqdnnpyarftatsslmdyisstftlrkivqqgdayqdskapvqdgkedtviava
pediyliervgnqsvqftpdsleagtvvghltyedkdligqgyitterpsfemvadkki

Chain 'D':
Sequence, based on SEQRES records: (download)

>1xp4D (D:)
gvstavaqdftiaakhaiaveantgkilyekdatqpveiasitklitvylvyealengsi
tlstpvdisdypyqlttnseasnipmearnytveelleatlvssansaaialaekiagse
kdfvdmmrakllewgiqdatvvnttglnnetlgdniypgskkdeenklsaydvaivarnl
ikkypqvleitkkpsstfagmtitstnymlegmpayrggfdglktgttdkagesfvgttv
ekgmrvitvvlnadhqdnnpyarftatsslmdyisstftlrkivqqgdayqdskapvqdg
kedtviavapediyliervgnqssqsvqftpdskaipapleagtvvghltyedkdligqg
yitterpsfemvadkkiek

Sequence, based on observed residues (ATOM records): (download)

>1xp4D (D:)
ftiaakhaiaveantgkilyekdatqpveiasitklitvylvyealengsitlstpvdis
dypyqlttnipmearnytveelleatlvssansaaialaekiagsekdfvdmmrakllew
giqdatvvnttglnnetlgdniypgskkdeenklsaydvaivarnlikkypqvleitkkp
sstfagmtitstnymlegmpayrggfdglktgttdkagesfvgttvekgmrvitvvlnad
hpyarftatsslmdyisstftlrkivqqgdayqdskavapediyliervqsvqftpdhlt
yedkdligqgyitterpsfem