PDB entry 1x9w

View 1x9w on RCSB PDB site
Description: T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-ATP as the incoming nucleotide.
Class: transferase/electron transport/DNA
Keywords: DNA polymerase, N-2-aminofluorene, mutagenesis, replication block, TRANSFERASE/ELECTRON TRANSPORT/DNA COMPLEX
Deposited on 2004-08-24, released 2004-10-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.23
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Enterobacteria phage T7 [TaxId:10760]
    Gene: 5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1x9wa1, d1x9wa2
  • Chain 'B':
    Compound: Thioredoxin 1
    Species: Escherichia coli [TaxId:562]
    Gene: trxA, tsnC, fipA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1x9wb_
  • Chain 'C':
    Compound: 5'-d(*gp*gp*ap*gp*ap*gp*tp*gp*ap*tp*t*gp*gp*t*ap*gp*tp*gp*tp*gp*ap*(2dt))-3'
  • Chain 'D':
    Compound: 5'-d(*cp*cp*cp*(afg)*ap*tp*cp*ap*cp*ap*cp*tp*ap*cp*cp*ap*ap*tp*cp*ap*cp*tp*cp*tp*cp*c)-3'
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1x9wA (A:)
mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhn
ghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgale
awgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekll
sdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvel
aarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpknkaq
regrepceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvdd
evlegvrvddpekqaaidlikeylmiqkrigqsaegdkawlryvaedgkihgsvnpngav
tgrathafpnlaqipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclah
fmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflygagdekigqivgagke
rgkelkkkflentpaiaalresiqqtlvessqwvageqqvkwkrrwikgldgrkvhvrsp
haalntllqsagalicklwiikteemlvekglkhgwdgdfaymawvhdeiqvgcrteeia
qvvietaqeamrwvgdhwnfrclldtegkmgpnwaich

    Sequence, based on observed residues (ATOM records): (download) 
    >1x9wA (A:)
mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhn
ghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgale
awgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekll
sdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvel
aarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifceldtrey
vagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekq
aaidlikeylmiqkrigqsaegdkawlryvaedgkihgsvnpngavtgrathafpnlaqi
pgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyahei
lngdihtknqiaaelptrdnaktfiygflygagdekigqivgagkergkelkkkflentp
aiaalresiqqtlvekwkrrwikgldgrkvhvrsphaalntllqsagalicklwiiktee
mlvekglkhgwdgdfaymawvhdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclld
tegkmgpnwaich

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1x9wB (B:)
sdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklni
dqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanla

    Sequence, based on observed residues (ATOM records): (download) 
    >1x9wB (B:)
kiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklnidq
npgtapkygirgiptlllfkngevaatkvgalskgqlkefldanl

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.