PDB entry 1x6m

View 1x6m on RCSB PDB site
Description: Crystal structure of the glutathione-dependent formaldehyde-activating enzyme (Gfa)
Class: lyase
Keywords: zn-enzyme, formaldehyde, 3_10 helix
Deposited on 2004-08-11, released 2004-11-23
The last revision prior to the SCOP 1.73 freeze date was dated 2005-03-15, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.193
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutathione-dependent formaldehyde-activating enzyme
    Species: Paracoccus denitrificans
    Gene: gfa
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q51669 (3-195)
      • cloning artifact (0-2)
    Domains in SCOP 1.73: d1x6ma_
  • Chain 'B':
    Compound: Glutathione-dependent formaldehyde-activating enzyme
    Species: Paracoccus denitrificans
    Gene: gfa
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q51669 (3-195)
      • cloning artifact (0-2)
    Domains in SCOP 1.73: d1x6mb_
  • Chain 'C':
    Compound: Glutathione-dependent formaldehyde-activating enzyme
    Species: Paracoccus denitrificans
    Gene: gfa
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q51669 (3-195)
      • cloning artifact (2)
    Domains in SCOP 1.73: d1x6mc_
  • Chain 'D':
    Compound: Glutathione-dependent formaldehyde-activating enzyme
    Species: Paracoccus denitrificans
    Gene: gfa
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q51669 (3-195)
      • cloning artifact (2)
    Domains in SCOP 1.73: d1x6md_
  • Heterogens: ZN, SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1x6mA (A:)
ghmvdtsgvkihpavdngikpaqpgfaggtlhckcstnpvrvavraqtahnhvcgctkcw
kpegaifsqvavvgrdalevlegaekleivnaeapiqrhrcrdcgvhmygrienrdhpfy
gldfvhtelsdedgwsapefaafvssiiesgvdpsrmeairarlrelglepydalspplm
daiathiakrsgalaa

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1x6mB (B:)
ghmvdtsgvkihpavdngikpaqpgfaggtlhckcstnpvrvavraqtahnhvcgctkcw
kpegaifsqvavvgrdalevlegaekleivnaeapiqrhrcrdcgvhmygrienrdhpfy
gldfvhtelsdedgwsapefaafvssiiesgvdpsrmeairarlrelglepydalspplm
daiathiakrsgalaa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1x6mC (C:)
ghmvdtsgvkihpavdngikpaqpgfaggtlhckcstnpvrvavraqtahnhvcgctkcw
kpegaifsqvavvgrdalevlegaekleivnaeapiqrhrcrdcgvhmygrienrdhpfy
gldfvhtelsdedgwsapefaafvssiiesgvdpsrmeairarlrelglepydalspplm
daiathiakrsgalaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1x6mC (C:)
mvdtsgvkihpavdngikpaqpgfaggtlhckcstnpvrvavraqtahnhvcgctkcwkp
egaifsqvavvgrdalevlegaekleivnaeapiqrhrcrdcgvhmygrienrdhpfygl
dfvhtelsdedgwsapefaafvssiiesgvdpsrmeairarlrelglepydalspplmda
iathiakrsgalaa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1x6mD (D:)
ghmvdtsgvkihpavdngikpaqpgfaggtlhckcstnpvrvavraqtahnhvcgctkcw
kpegaifsqvavvgrdalevlegaekleivnaeapiqrhrcrdcgvhmygrienrdhpfy
gldfvhtelsdedgwsapefaafvssiiesgvdpsrmeairarlrelglepydalspplm
daiathiakrsgalaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1x6mD (D:)
mvdtsgvkihpavdngikpaqpgfaggtlhckcstnpvrvavraqtahnhvcgctkcwkp
egaifsqvavvgrdalevlegaekleivnaeapiqrhrcrdcgvhmygrienrdhpfygl
dfvhtelsdedgwsapefaafvssiiesgvdpsrmeairarlrelglepydalspplmda
iathiakrsgalaa