PDB entry 1x23

View 1x23 on RCSB PDB site
Description: Crystal structure of ubch5c
Class: ligase
Keywords: Ubiquitin conjugating enzyme, Ubiquitin, E2, LIGASE
Deposited on 2005-04-19, released 2005-05-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.204
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2 D3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61077 (8-154)
      • cloning artifact (2-7)
    Domains in SCOPe 2.08: d1x23a1, d1x23a2
  • Chain 'B':
    Compound: Ubiquitin-conjugating enzyme E2 D3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61077 (8-154)
      • cloning artifact (3-7)
    Domains in SCOPe 2.08: d1x23b2, d1x23b3
  • Chain 'C':
    Compound: Ubiquitin-conjugating enzyme E2 D3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61077 (8-154)
      • cloning artifact (3-7)
    Domains in SCOPe 2.08: d1x23c2, d1x23c3
  • Chain 'D':
    Compound: Ubiquitin-conjugating enzyme E2 D3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61077 (8-154)
      • cloning artifact (1-7)
    Domains in SCOPe 2.08: d1x23d2, d1x23d3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1x23A (A:)
gplgspefmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvffl
tihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcd
pnpddplvpeiariyktdrdkynrisrewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >1x23A (A:)
lgspefmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvfflti
hfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpn
pddplvpeiariyktdrdkynrisrewtqkyam

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1x23B (B:)
gplgspefmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvffl
tihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcd
pnpddplvpeiariyktdrdkynrisrewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >1x23B (B:)
gspefmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvffltih
fptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnp
ddplvpeiariyktdrdkynrisrewtqkyam

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1x23C (C:)
gplgspefmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvffl
tihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcd
pnpddplvpeiariyktdrdkynrisrewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >1x23C (C:)
gspefmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvffltih
fptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnp
ddplvpeiariyktdrdkynrisrewtqkyam

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1x23D (D:)
gplgspefmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvffl
tihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcd
pnpddplvpeiariyktdrdkynrisrewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >1x23D (D:)
plgspefmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvfflt
ihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdp
npddplvpeiariyktdrdkynrisrewtqkyam