PDB entry 1wyt

View 1wyt on RCSB PDB site
Description: Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
Class: oxidoreductase
Keywords: ALPHA(2)BETA(2) TETRAMER, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics
Deposited on 2005-02-17, released 2005-04-05
The last revision prior to the SCOP 1.73 freeze date was dated 2005-06-21, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.177
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycine dehydrogenase (decarboxylating) subunit 1
    Species: Thermus thermophilus
    Gene: GCSA
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1wyta1
  • Chain 'B':
    Compound: glycine dehydrogenase subunit 2 (P-protein)
    Species: Thermus thermophilus
    Gene: GCSB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1wytb1
  • Chain 'C':
    Compound: glycine dehydrogenase (decarboxylating) subunit 1
    Species: Thermus thermophilus
    Gene: GCSA
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1wytc1
  • Chain 'D':
    Compound: glycine dehydrogenase subunit 2 (P-protein)
    Species: Thermus thermophilus
    Gene: GCSB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1wytd1
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1wytA (A:)
mdytphteeeiremlrrvgaasledlfahlpkeilsppidlpeplpewkvleelrrlaaq
nlpahkaflgggvrshhvppvvqalaargefltaytpyqpevsqgvlqatfeyqtmiael
agleianasmydgatalaegvllalretgrmgvlvsqgvhpeyravlrayleavgakllt
lpleggrtplpevgeevgavvvqnpnflgaledlgpfaeaahgagalfvavadplslgvl
kppgaygadiavgdgqslglpmgfggphfgflatkkafvrqlpgrlvsetvdvegrrgfi
ltlqareqyirrakaksnittnaqltalmgamylaalgpeglrevalksvemahklhall
levpgvrpftpkpffnefalalpkdpeavrralaergfhgatpvpreygenlalfaatel
heeedllalrealkevla

    Sequence, based on observed residues (ATOM records): (download) 
    >1wytA (A:)
mdytphteeeiremlrrvgaasledlfahlpkeilsppidlpeplpewkvleelrrlaaq
nlpahkaflgggvrshhvppvvqalaargefltaytpyqpevsqgvlqatfeyqtmiael
agleianasmydgatalaegvllalretgrmgvlvsqgvhpeyravlrayleavgakllt
lpleggrtplpevgeevgavvvqnpnflgaledlgpfaeaahgagalfvavadplslgvl
kppgaygadiavgdgqslglpmgfggphfgflatkkafvrqlpgrlvsetvdvegrrgfi
ltlqareqyirrakaksnittnaqltalmgamylaalgpeglrevalksvemahklhall
levpgvrpftpkpffnefalalpkdpeavrralaergfhgatpvpreygenlalfaatel
heeedllalrealkevl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1wytB (B:)
msfplifersrkgrrglklvkavpkaedlipkehlrevpprlpevdeltlvrhytglsrr
qvgvdttfyplgsctmkynpklheeaarlfadlhpyqdprtaqgalrlmwelgeylkalt
gmdaitlepaagahgeltgiliirayhedrgegrtrrvvlvpdsahgsnpatasmagyqv
reipsgpegevdlealkrelgphvaalmltnpntlglferrileisrlckeagvqlyydg
anlnaimgwarpgdmgfdvvhlnlhktftvphggggpgsgpvgvkahlapylpvplverg
eegfyldfdrpksigrvrsfygnflalvrawayirtlgleglkkaaalavlnarylkell
kekgyrvpydgpsmhefvaqppegfraldlakgllelgfhpptvyfplivkealmvepte
teaketleafaeamgallkkpkewlenapystpvrrldelrankhpkltyfdeg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wytB (B:)
sfplifersrkgrrglklvkavpkaedlipkehlrevpprlpevdeltlvrhytglsrrq
vgvdttfyplgsctmkynpklheeaarlfadlhpyqdprtaqgalrlmwelgeylkaltg
mdaitlepaagahgeltgiliirayhedrgegrtrrvvlvpdsahgsnpatasmagyqvr
eipsgpegevdlealkrelgphvaalmltnpntlglferrileisrlckeagvqlyydga
nlnaimgwarpgdmgfdvvhlnlhktftvphggggpgsgpvgvkahlapylpvplverge
egfyldfdrpksigrvrsfygnflalvrawayirtlgleglkkaaalavlnarylkellk
ekgyrvpydgpsmhefvaqppegfraldlakgllelgfhpptvyfplivkealmveptet
eaketleafaeamgallkkpkewlenapystpvrrldelrankhpkltyfd

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1wytC (C:)
mdytphteeeiremlrrvgaasledlfahlpkeilsppidlpeplpewkvleelrrlaaq
nlpahkaflgggvrshhvppvvqalaargefltaytpyqpevsqgvlqatfeyqtmiael
agleianasmydgatalaegvllalretgrmgvlvsqgvhpeyravlrayleavgakllt
lpleggrtplpevgeevgavvvqnpnflgaledlgpfaeaahgagalfvavadplslgvl
kppgaygadiavgdgqslglpmgfggphfgflatkkafvrqlpgrlvsetvdvegrrgfi
ltlqareqyirrakaksnittnaqltalmgamylaalgpeglrevalksvemahklhall
levpgvrpftpkpffnefalalpkdpeavrralaergfhgatpvpreygenlalfaatel
heeedllalrealkevla

    Sequence, based on observed residues (ATOM records): (download) 
    >1wytC (C:)
mdytphteeeiremlrrvgaasledlfahlpkeilsppidlpeplpewkvleelrrlaaq
nlpahkaflgggvrshhvppvvqalaargefltaytpyqpevsqgvlqatfeyqtmiael
agleianasmydgatalaegvllalretgrmgvlvsqgvhpeyravlrayleavgakllt
lpleggrtplpevgeevgavvvqnpnflgaledlgpfaeaahgagalfvavadplslgvl
kppgaygadiavgdgqslglpmgfggphfgflatkkafvrqlpgrlvsetvdvegrrgfi
ltlqareqyirrakaksnittnaqltalmgamylaalgpeglrevalksvemahklhall
levpgvrpftpkpffnefalalpkdpeavrralaergfhgatpvpreygenlalfaatel
heeedllalrealkevl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1wytD (D:)
msfplifersrkgrrglklvkavpkaedlipkehlrevpprlpevdeltlvrhytglsrr
qvgvdttfyplgsctmkynpklheeaarlfadlhpyqdprtaqgalrlmwelgeylkalt
gmdaitlepaagahgeltgiliirayhedrgegrtrrvvlvpdsahgsnpatasmagyqv
reipsgpegevdlealkrelgphvaalmltnpntlglferrileisrlckeagvqlyydg
anlnaimgwarpgdmgfdvvhlnlhktftvphggggpgsgpvgvkahlapylpvplverg
eegfyldfdrpksigrvrsfygnflalvrawayirtlgleglkkaaalavlnarylkell
kekgyrvpydgpsmhefvaqppegfraldlakgllelgfhpptvyfplivkealmvepte
teaketleafaeamgallkkpkewlenapystpvrrldelrankhpkltyfdeg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wytD (D:)
sfplifersrkgrrglklvkavpkaedlipkehlrevpprlpevdeltlvrhytglsrrq
vgvdttfyplgsctmkynpklheeaarlfadlhpyqdprtaqgalrlmwelgeylkaltg
mdaitlepaagahgeltgiliirayhedrgegrtrrvvlvpdsahgsnpatasmagyqvr
eipsgpegevdlealkrelgphvaalmltnpntlglferrileisrlckeagvqlyydga
nlnaimgwarpgdmgfdvvhlnlhktftvphggggpgsgpvgvkahlapylpvplverge
egfyldfdrpksigrvrsfygnflalvrawayirtlgleglkkaaalavlnarylkellk
ekgyrvpydgpsmhefvaqppegfraldlakgllelgfhpptvyfplivkealmveptet
eaketleafaeamgallkkpkewlenapystpvrrldelrankhpkltyfd