PDB entry 1wmg
View 1wmg on RCSB PDB site
Description: Crystal structure of the UNC5H2 death domain
Class: apoptosis
Keywords: six helix bundle, death domain, apoptosis, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Deposited on
2004-07-09, released
2005-01-09
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-11-16, with a file datestamp of
2011-11-11.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.229
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: netrin receptor Unc5h2
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8K1S3 (7-96)
- modified residue (42)
- modified residue (83)
- modified residue (88)
- modified residue (92)
Domains in SCOPe 2.08: d1wmga_ - Chain 'B':
Compound: netrin receptor Unc5h2
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8K1S3
- modified residue (42)
- modified residue (83)
- modified residue (88)
- modified residue (92)
Domains in SCOPe 2.08: d1wmgb_ - Chain 'C':
Compound: netrin receptor Unc5h2
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8K1S3 (7-End)
- modified residue (42)
- modified residue (83)
- modified residue (88)
- modified residue (92)
Domains in SCOPe 2.08: d1wmgc_ - Chain 'D':
Compound: netrin receptor Unc5h2
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8K1S3 (7-End)
- modified residue (42)
- modified residue (83)
- modified residue (88)
- modified residue (92)
Domains in SCOPe 2.08: d1wmgd_ - Chain 'E':
Compound: netrin receptor Unc5h2
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8K1S3 (7-End)
- modified residue (42)
- modified residue (83)
- modified residue (88)
- modified residue (92)
Domains in SCOPe 2.08: d1wmge_ - Chain 'F':
Compound: netrin receptor Unc5h2
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8K1S3
- modified residue (42)
- modified residue (83)
- modified residue (88)
- modified residue (92)
Domains in SCOPe 2.08: d1wmgf_ - Heterogens: SO3, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1wmgA (A:)
gssgssgyafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvi
ldlwearqqddgdlnslasaleemgksemlvamatdgsgpssg
Sequence, based on observed residues (ATOM records): (download)
>1wmgA (A:)
yafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvildlwear
qqddgdlnslasaleemgksemlvamatdg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1wmgB (B:)
gssgssgyafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvi
ldlwearqqddgdlnslasaleemgksemlvamatdgsgpssg
Sequence, based on observed residues (ATOM records): (download)
>1wmgB (B:)
afkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvildlwearq
dlnslasaleemgksemlvamat
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1wmgC (C:)
gssgssgyafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvi
ldlwearqqddgdlnslasaleemgksemlvamatdgsgpssg
Sequence, based on observed residues (ATOM records): (download)
>1wmgC (C:)
yafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvildlwear
qqdgdlnslasaleemgksemlvamatd
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1wmgD (D:)
gssgssgyafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvi
ldlwearqqddgdlnslasaleemgksemlvamatdgsgpssg
Sequence, based on observed residues (ATOM records): (download)
>1wmgD (D:)
yafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvildlwear
qgdlnslasaleemgksemlvamatd
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1wmgE (E:)
gssgssgyafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvi
ldlwearqqddgdlnslasaleemgksemlvamatdgsgpssg
Sequence, based on observed residues (ATOM records): (download)
>1wmgE (E:)
yafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvildlwear
qqddgdlnslasaleemgksemlvamat
- Chain 'F':
Sequence, based on SEQRES records: (download)
>1wmgF (F:)
gssgssgyafkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvi
ldlwearqqddgdlnslasaleemgksemlvamatdgsgpssg
Sequence, based on observed residues (ATOM records): (download)
>1wmgF (F:)
afkiplsirqkicssldapnsrgndwrllaqklsmdrylnyfatkasptgvildlwearq
qddgdlnslasaleemgksemlvamat