PDB entry 1wkk
View 1wkk on RCSB PDB site
Description: Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 in Complex with GDP
Class: transferase
Keywords: nucleoside diphosphate kinase, complex with GDP, Thermus themophilus HB8, kinase, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, TRANSFERASE
Deposited on
2004-06-01, released
2005-08-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.201
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Thermus thermophilus [TaxId:274]
Gene: ndk
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1wkka_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Thermus thermophilus [TaxId:274]
Gene: ndk
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1wkkb_ - Heterogens: GDP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1wkkA (A:)
mertfvmikpdgvrrglvgeilarferkgfriaalklmqisqelaerhyaehrekpffpg
lvrfitsgpvvamvlegpgvvaevrkmmgathpkdalpgtirgdfattidenvihgsatl
edaqreialffrpeell
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1wkkB (B:)
mertfvmikpdgvrrglvgeilarferkgfriaalklmqisqelaerhyaehrekpffpg
lvrfitsgpvvamvlegpgvvaevrkmmgathpkdalpgtirgdfattidenvihgsatl
edaqreialffrpeell