PDB entry 1wdw

View 1wdw on RCSB PDB site
Description: Structural basis of mutual activation of the tryptophan synthase a2b2 complex from a hyperthermophile, Pyrococcus furiosus
Class: lyase
Keywords: alpha/beta, alpha+beta, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, LYASE
Deposited on 2004-05-19, released 2005-07-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.196
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tryptophan synthase alpha chain
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: trpA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwa_
  • Chain 'B':
    Compound: Tryptophan synthase beta chain 1
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: TrpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwb_
  • Chain 'C':
    Compound: tryptophan synthase alpha chain
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: trpA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwc_
  • Chain 'D':
    Compound: Tryptophan synthase beta chain 1
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: TrpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwd_
  • Chain 'E':
    Compound: tryptophan synthase alpha chain
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: trpA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwe_
  • Chain 'F':
    Compound: Tryptophan synthase beta chain 1
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: TrpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwf_
  • Chain 'G':
    Compound: tryptophan synthase alpha chain
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: trpA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwg_
  • Chain 'H':
    Compound: Tryptophan synthase beta chain 1
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: TrpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwh_
  • Chain 'I':
    Compound: tryptophan synthase alpha chain
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: trpA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwi_
  • Chain 'J':
    Compound: Tryptophan synthase beta chain 1
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: TrpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwj_
  • Chain 'K':
    Compound: tryptophan synthase alpha chain
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: trpA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwk_
  • Chain 'L':
    Compound: Tryptophan synthase beta chain 1
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: TrpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdwl_
  • Heterogens: PLP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1wdwA (A:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslygttgareeipktay
    dllrrakricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkk
    kveellgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >1wdwA (A:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslyeeipktaydllrra
    kricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkkkveell
    g
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1wdwB (B:)
    mwfgefggqyvpetlieplkelekaykrfkddeefnrqlnyylktwagrptplyyakrlt
    ekiggakiylkredlvhggahktnnaigqallakfmgktrliaetgagqhgvatamagal
    lgmkvdiymgaedverqkmnvfrmkllganvipvnsgsrtlkdainealrdwvatfeyth
    yligsvvgphpyptivrdfqsvigreakaqileaegqlpdvivacvgggsnamgifypfv
    ndkkvklvgveaggkglesgkhsaslnagqvgvfhgmlsyflqdeegqikpthsiapgld
    ypgvgpehaylkkiqraeyvtvtdeealkafhelsrtegiipalesahavayamklakem
    srdeiiivnlsgrgdkdldivlkvs
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1wdwC (C:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslygttgareeipktay
    dllrrakricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkk
    kveellgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >1wdwC (C:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslyeipktaydllrrak
    ricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkkkveellg
    i
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1wdwD (D:)
    mwfgefggqyvpetlieplkelekaykrfkddeefnrqlnyylktwagrptplyyakrlt
    ekiggakiylkredlvhggahktnnaigqallakfmgktrliaetgagqhgvatamagal
    lgmkvdiymgaedverqkmnvfrmkllganvipvnsgsrtlkdainealrdwvatfeyth
    yligsvvgphpyptivrdfqsvigreakaqileaegqlpdvivacvgggsnamgifypfv
    ndkkvklvgveaggkglesgkhsaslnagqvgvfhgmlsyflqdeegqikpthsiapgld
    ypgvgpehaylkkiqraeyvtvtdeealkafhelsrtegiipalesahavayamklakem
    srdeiiivnlsgrgdkdldivlkvs
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1wdwE (E:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslygttgareeipktay
    dllrrakricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkk
    kveellgi
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1wdwF (F:)
    mwfgefggqyvpetlieplkelekaykrfkddeefnrqlnyylktwagrptplyyakrlt
    ekiggakiylkredlvhggahktnnaigqallakfmgktrliaetgagqhgvatamagal
    lgmkvdiymgaedverqkmnvfrmkllganvipvnsgsrtlkdainealrdwvatfeyth
    yligsvvgphpyptivrdfqsvigreakaqileaegqlpdvivacvgggsnamgifypfv
    ndkkvklvgveaggkglesgkhsaslnagqvgvfhgmlsyflqdeegqikpthsiapgld
    ypgvgpehaylkkiqraeyvtvtdeealkafhelsrtegiipalesahavayamklakem
    srdeiiivnlsgrgdkdldivlkvs
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1wdwG (G:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslygttgareeipktay
    dllrrakricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkk
    kveellgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >1wdwG (G:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslyeeipktaydllrra
    kricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkkkveell
    gi
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1wdwH (H:)
    mwfgefggqyvpetlieplkelekaykrfkddeefnrqlnyylktwagrptplyyakrlt
    ekiggakiylkredlvhggahktnnaigqallakfmgktrliaetgagqhgvatamagal
    lgmkvdiymgaedverqkmnvfrmkllganvipvnsgsrtlkdainealrdwvatfeyth
    yligsvvgphpyptivrdfqsvigreakaqileaegqlpdvivacvgggsnamgifypfv
    ndkkvklvgveaggkglesgkhsaslnagqvgvfhgmlsyflqdeegqikpthsiapgld
    ypgvgpehaylkkiqraeyvtvtdeealkafhelsrtegiipalesahavayamklakem
    srdeiiivnlsgrgdkdldivlkvs
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >1wdwI (I:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslygttgareeipktay
    dllrrakricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkk
    kveellgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >1wdwI (I:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslygreeipktaydllr
    rakricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkkkvee
    llgi
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1wdwJ (J:)
    mwfgefggqyvpetlieplkelekaykrfkddeefnrqlnyylktwagrptplyyakrlt
    ekiggakiylkredlvhggahktnnaigqallakfmgktrliaetgagqhgvatamagal
    lgmkvdiymgaedverqkmnvfrmkllganvipvnsgsrtlkdainealrdwvatfeyth
    yligsvvgphpyptivrdfqsvigreakaqileaegqlpdvivacvgggsnamgifypfv
    ndkkvklvgveaggkglesgkhsaslnagqvgvfhgmlsyflqdeegqikpthsiapgld
    ypgvgpehaylkkiqraeyvtvtdeealkafhelsrtegiipalesahavayamklakem
    srdeiiivnlsgrgdkdldivlkvs
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >1wdwK (K:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvslygttgareeipktay
    dllrrakricrnkvavgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkk
    kveellgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >1wdwK (K:)
    mfkdgslipyltagdpdkqstlnfllaldeyagaielgipfsdpiadgktiqeshyralk
    ngfklreafwivkefrrhsstpivlmtyynpiyragvrnflaeakasgvdgilvvdlpvf
    hakefteiareegiktvflaapntpderlkviddmttgfvylvsaydllrrakricrnkv
    avgfgvskrehvvsllkegangvvvgsalvkiigekgreateflkkkveellgi
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1wdwL (L:)
    mwfgefggqyvpetlieplkelekaykrfkddeefnrqlnyylktwagrptplyyakrlt
    ekiggakiylkredlvhggahktnnaigqallakfmgktrliaetgagqhgvatamagal
    lgmkvdiymgaedverqkmnvfrmkllganvipvnsgsrtlkdainealrdwvatfeyth
    yligsvvgphpyptivrdfqsvigreakaqileaegqlpdvivacvgggsnamgifypfv
    ndkkvklvgveaggkglesgkhsaslnagqvgvfhgmlsyflqdeegqikpthsiapgld
    ypgvgpehaylkkiqraeyvtvtdeealkafhelsrtegiipalesahavayamklakem
    srdeiiivnlsgrgdkdldivlkvs