PDB entry 1wbd

View 1wbd on RCSB PDB site
Description: crystal structure of e. coli DNA mismatch repair enzyme muts, e38q mutant, in complex with a g.t mismatch
Class: DNA-binding
Keywords: DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition
Deposited on 2004-10-31, released 2006-01-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.213
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA mismatch repair protein muts
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P23909 (Start-799)
      • engineered mutation (37)
    Domains in SCOPe 2.07: d1wbda1, d1wbda2, d1wbda3, d1wbda4
  • Chain 'B':
    Compound: DNA mismatch repair protein muts
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P23909 (Start-799)
      • engineered mutation (37)
    Domains in SCOPe 2.07: d1wbdb1, d1wbdb2, d1wbdb3
  • Chain 'E':
    Compound: 5'-d(*ap*gp*cp*tp*gp*cp*cp*ap*gp*gp *cp*ap*cp*cp*ap*gp*tp*g)-3'
  • Chain 'F':
    Compound: 5'-d(*ap*cp*tp*gp*gp*tp*gp*cp*tp*tp *gp*gp*cp*ap*gp*cp*t)-3'
  • Heterogens: ADP, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1wbdA (A:)
msaienfdahtpmmqqylrlkaqhpeillfyrmgdfyqlfyddakrasqlldisltkrga
sagepipmagipyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtis
deallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaelly
aedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcl
lqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvt
pmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrta
rprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvr
dggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrg
qshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphle
alqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianp
lnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgaa
ddlasgrstfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankik
altlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalag
vpkevikrarqklrelesis

    Sequence, based on observed residues (ATOM records): (download) 
    >1wbdA (A:)
saienfdahtpmmqqylrlkaqhpeillfyrmgdfyqlfyddakrasqlldisltkrgas
agepipmagipyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtisd
eallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellya
edfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcll
qyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtp
mgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtar
prdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrd
ggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgq
shlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlea
lqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianpl
nlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgfmv
emtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfel
tqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqk
lrelesis

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1wbdB (B:)
msaienfdahtpmmqqylrlkaqhpeillfyrmgdfyqlfyddakrasqlldisltkrga
sagepipmagipyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtis
deallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaelly
aedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcl
lqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvt
pmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrta
rprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvr
dggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrg
qshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphle
alqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianp
lnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgaa
ddlasgrstfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankik
altlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalag
vpkevikrarqklrelesis

    Sequence, based on observed residues (ATOM records): (download) 
    >1wbdB (B:)
mqqylrlkaqhpeillfyrmgdfyqlfyddakrasqlldisltpmagipyhavenylakl
vnqgesvaicerkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfr
lsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlq
fgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrn
leitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdfta
glqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrek
mgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrere
rtgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvlts
kgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkp
giritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayi
gsyvpaqkveigpidriftrvgtfmvemtetanilhnateyslvlmdeigrgtstydgls
lawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdga
asksyglavaalagvpkevikrarqklrelesis

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.