PDB entry 1wb3

View 1wb3 on RCSB PDB site
Description: crystal structure of translation elongation factor selb from methanococcus maripaludis in complex with the GTP analogue gppnhp
Class: protein synthesis
Keywords: selenocysteine, protein synthesis, selenium, ribosome
Deposited on 2004-10-29, released 2005-01-04
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.347
AEROSPACI score: -0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • PDB 1WB3 (Start-13)
    • Uniprot Q8J307 (14-481)
    Domains in SCOPe 2.01: d1wb3a1, d1wb3a2, d1wb3a3, d1wb3a4
  • Chain 'B':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • PDB 1WB3
    • Uniprot Q8J307 (14-End)
    Domains in SCOPe 2.01: d1wb3b1, d1wb3b2, d1wb3b3
  • Chain 'C':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • PDB 1WB3 (Start-13)
    • Uniprot Q8J307 (14-481)
    Domains in SCOPe 2.01: d1wb3c1, d1wb3c2, d1wb3c3, d1wb3c4
  • Chain 'D':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1wb3d1, d1wb3d2, d1wb3d3
  • Heterogens: GNP, MG, SO4, DXC

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1wb3A (A:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wb3A (A:)
phmdfkninlgifghidhgkttlskvlteiaigfsafklenyritlvdapghadliravv
saadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagteeikrtemimk
silqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldhafpik
gagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmaiqgvda
kqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpavavpfkk
vtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttlricghglie
efkpikdlnikkevlregkvkidkgrtvidglaqskvaaekligeeisiegkdivgkikg
tfgtkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1wb3B (B:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wb3B (B:)
mdfkninlgifghidhgkttlskvlteiapesqkrgitidigfsafklenyritlvdapg
hadliravvsaadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagtee
ikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkm
pldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrv
gmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmliv
pavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttl
ricghglieefkpikdlnikk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1wb3C (C:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wb3C (C:)
egrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgitidigfsafk
lenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipii
vvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnn
aeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyf
kesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltp
kmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdr
vlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvidglaqskva
aekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1wb3D (D:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wb3D (D:)
ninlgifghidhgkttlskvlteiastfsafklenyritlvddliravvsaadiidlali
vvdakegpktqtgehmlildhfnipiivvitksdnagteeikrtemimksilqsthnlkn
ssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldhafpikgagtvvtgtin
kgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgcilts
kdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpavavpfkkeniinecycaf
eleekvlaevgdrvlitrldlppttlricghglieefkpikdlnik