PDB entry 1wb2

View 1wb2 on RCSB PDB site
Description: Crystal structure of translation elongation factor SelB from Methanococcus maripaludis, apo form
Class: protein synthesis
Keywords: selenocysteine, protein synthesis, selenium, ribosome
Deposited on 2004-10-29, released 2005-01-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-11-07, with a file datestamp of 2012-11-02.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.336
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • PDB 1WB2 (Start-13)
    • Uniprot Q8J307 (14-481)
    Domains in SCOPe 2.07: d1wb2a5, d1wb2a6, d1wb2a7, d1wb2a8, d1wb2a9
  • Chain 'B':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • PDB 1WB2
    • Uniprot Q8J307 (14-End)
    Domains in SCOPe 2.07: d1wb2b4, d1wb2b5, d1wb2b6
  • Chain 'C':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • PDB 1WB2 (Start-13)
    • Uniprot Q8J307 (14-481)
    Domains in SCOPe 2.07: d1wb2c5, d1wb2c6, d1wb2c7, d1wb2c8, d1wb2c9
  • Chain 'D':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1wb2d4, d1wb2d5, d1wb2d6
  • Heterogens: SO4, DXC

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1wb2A (A:)
    mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
    idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
    ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
    nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
    tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
    difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
    kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
    dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
    wg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1wb2A (A:)
    phmdfkninlgifghidhgkttlskvlteiasgfsafklenyritlvdapghadliravv
    saadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagteeikrtemimk
    silqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldhafpik
    gagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmaiqgvda
    kqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpavavpfkk
    vtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttlricghglie
    efkpikdlnikkevlregkvkidkgrtvidglaqskvaaekligeeisiegkdivgkikg
    tfgtkglltaefsgnvenrdkvilnrlrrwg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1wb2B (B:)
    mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
    idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
    ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
    nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
    tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
    difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
    kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
    dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
    wg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1wb2B (B:)
    mdfkninlgifghidhgkttlskvlteiaspesqkrgitidigfsafklenyritlvdap
    ghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagte
    eikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfk
    mpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdr
    vgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmli
    vpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlpptt
    lricghglieefkpikdlnikk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1wb2C (C:)
    mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
    idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
    ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
    nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
    tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
    difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
    kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
    dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
    wg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1wb2C (C:)
    egrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgitidigfsafk
    lenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipii
    vvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnn
    aeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyf
    kesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltp
    kmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdr
    vlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvidglaqskva
    aekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrrwg
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1wb2D (D:)
    mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
    idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
    ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
    nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
    tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
    difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
    kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
    dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
    wg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1wb2D (D:)
    ninlgifghidhgkttlskvlteiastfsafklenyritlvddliravvsaadiidlali
    vvdakegpktqtgehmlildhfnipiivvitksdnagteeikrtemimksilqsthnlkn
    ssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldhafpikgagtvvtgtin
    kgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgcilts
    kdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpavavpfkkeniinecycaf
    eleekvlaevgdrvlitrldlppttlricghglieefkpikdlnik