PDB entry 1wb1

View 1wb1 on RCSB PDB site
Description: Crystal structure of translation elongation factor SelB from Methanococcus maripaludis in complex with GDP
Class: protein synthesis
Keywords: selenocysteine, protein synthesis, selenium, ribosome
Deposited on 2004-10-29, released 2005-01-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-08-22, with a file datestamp of 2012-08-17.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.317
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • PDB 1WB1 (Start-13)
    • Uniprot Q8J307 (14-481)
    Domains in SCOPe 2.06: d1wb1a5, d1wb1a6, d1wb1a7, d1wb1a8, d1wb1a9
  • Chain 'B':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • PDB 1WB1
    • Uniprot Q8J307 (14-End)
    Domains in SCOPe 2.06: d1wb1b4, d1wb1b5, d1wb1b6
  • Chain 'C':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • PDB 1WB1 (Start-13)
    • Uniprot Q8J307 (14-481)
    Domains in SCOPe 2.06: d1wb1c5, d1wb1c6, d1wb1c7, d1wb1c8, d1wb1c9
  • Chain 'D':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1wb1d4, d1wb1d5, d1wb1d6
  • Heterogens: GDP, MG, SO4, DXC

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1wb1A (A:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wb1A (A:)
phmdfkninlgifghidhgkttlskvlteiagfsafklenyritlvdapghadliravvs
aadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagteeikrtemimks
ilqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldhafpikg
agtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmaiqgvdak
qiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpavavpfkkv
tfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttlricghgliee
fkpikdlnikkevlregkvkidkgrtvidglaqskvaaekligeeisiegkdivgkikgt
fgtkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1wb1B (B:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wb1B (B:)
mdfkninlgifghidhgkttlskvlteiaspesqkrgitidigfsafklenyritlvdap
ghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagte
eikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfk
mpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdr
vgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmli
vpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlpptt
lricghglieefkpikdlnikk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1wb1C (C:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wb1C (C:)
egrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgitidigfsafk
lenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipii
vvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnn
aeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyf
kesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltp
kmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdr
vlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvidglaqskva
aekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1wb1D (D:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >1wb1D (D:)
ninlgifghidhgkttlskvlteiastfsafklenyritlvddliravvsaadiidlali
vvdakegpktqtgehmlildhfnipiivvitksdnagteeikrtemimksilqsthnlkn
ssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldhafpikgagtvvtgtin
kgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgcilts
kdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpavavpfkkeniinecycaf
eleekvlaevgdrvlitrldlppttlricghglieefkpikdlnik