PDB entry 1w9e
View 1w9e on RCSB PDB site
Description: Crystal structure of the PDZ tandem of human syntenin in complex with TNEFYF peptide
Class: cell adhesion
Keywords: cell adhesion, adhesion-complex, pdz domain, scaffolding protein signaling protein
Deposited on
2004-10-09, released
2006-03-22
The last revision prior to the SCOPe 2.04 freeze date was dated
2012-05-30, with a file datestamp of
2012-05-25.
Experiment type: XRAY
Resolution: 1.56 Å
R-factor: 0.172
AEROSPACI score: 0.63
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Syntenin 1
Species: Homo sapiens [TaxId:9606]
Gene: SDCBP OR MDA9 OR SYCL
Database cross-references and differences (RAF-indexed):
- PDB 1W9E (Start-4)
- Uniprot O00560 (5-165)
Domains in SCOPe 2.04: d1w9ea1, d1w9ea2 - Chain 'B':
Compound: Syntenin 1
Species: Homo sapiens [TaxId:9606]
Gene: SDCBP OR MDA9 OR SYCL
Database cross-references and differences (RAF-indexed):
- PDB 1W9E (Start-4)
- Uniprot O00560 (5-165)
Domains in SCOPe 2.04: d1w9eb1, d1w9eb2 - Chain 'R':
Compound: tnefyf peptide
Database cross-references and differences (RAF-indexed):
- Chain 'S':
Compound: tnefyf peptide
Database cross-references and differences (RAF-indexed):
- Chain 'T':
Compound: tnefyf peptide
Database cross-references and differences (RAF-indexed):
- Heterogens: BEZ, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1w9eA (A:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf
Sequence, based on observed residues (ATOM records): (download)
>1w9eA (A:)
mdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagw
ssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaar
nglltehniceingqnviglkdsqiadilstsgtvvtitimpaf
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1w9eB (B:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf
Sequence, based on observed residues (ATOM records): (download)
>1w9eB (B:)
mdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagw
ssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaar
nglltehniceingqnviglkdsqiadilstsgtvvtitimpaf
- Chain 'R':
No sequence available.
- Chain 'S':
No sequence available.
- Chain 'T':
No sequence available.